Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY10767 | Canola | nucleus | 74.26 | 81.92 |
| CDY58982 | Canola | nucleus | 55.32 | 48.6 |
| CDX97772 | Canola | extracellular, vacuole | 54.89 | 46.15 |
| AT2G30990.4 | Thale cress | nucleus | 57.02 | 45.19 |
| KRH22276 | Soybean | nucleus | 11.49 | 32.53 |
| KRH74883 | Soybean | nucleus | 17.66 | 26.77 |
| Solyc07g055140.2.1 | Tomato | nucleus | 19.36 | 25.85 |
| VIT_12s0028g02110.t01 | Wine grape | nucleus | 35.53 | 24.63 |
| PGSC0003DMT400052652 | Potato | nucleus | 29.36 | 23.47 |
| Solyc12g013960.1.1 | Tomato | nucleus | 30.43 | 23.29 |
| KRH27055 | Soybean | nucleus | 27.66 | 23.17 |
| KRH04495 | Soybean | nucleus | 15.11 | 22.76 |
| CDY06031 | Canola | nucleus | 20.64 | 22.2 |
| CDX87761 | Canola | nucleus | 20.43 | 22.17 |
| PGSC0003DMT400039770 | Potato | cytosol | 26.81 | 21.99 |
| KRH25783 | Soybean | nucleus | 32.13 | 21.36 |
| KRH55736 | Soybean | nucleus | 30.85 | 21.11 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 23.19 | 20.92 |
| CDY43328 | Canola | nucleus | 22.55 | 20.74 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 20.0 | 20.61 |
| CDX90178 | Canola | nucleus | 21.91 | 20.24 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 28.3 | 20.0 |
| CDX94655 | Canola | mitochondrion | 20.21 | 19.55 |
| CDY01559 | Canola | nucleus, plastid | 18.51 | 19.51 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 27.02 | 19.36 |
| CDX78880 | Canola | nucleus | 19.57 | 19.29 |
| CDX99449 | Canola | nucleus | 18.94 | 18.86 |
| CDY63140 | Canola | nucleus | 19.36 | 18.61 |
| CDY17227 | Canola | nucleus | 19.15 | 18.37 |
| CDY53997 | Canola | plastid | 16.17 | 18.05 |
| Os01t0758900-01 | Rice | nucleus | 23.19 | 15.98 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 23.83 | 15.91 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 22.34 | 15.51 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 23.19 | 15.29 |
| Zm00001d043395_P002 | Maize | nucleus | 21.91 | 15.15 |
| EES01501 | Sorghum | nucleus | 21.49 | 14.68 |
Protein Annotations
| EnsemblPlants:CDY52694 | EnsemblPlantsGene:GSBRNA2T00007606001 | InterPro:DUF688 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF2 | PFAM:PF05097 |
| ProteinID:CDY52694 | ProteinID:CDY52694.1 | SEG:seg | UniParc:UPI0004EAF195 | UniProt:A0A078ITE1 | MapMan:35.2 |
Description
BnaC04g54340DBnaC04g54340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078ITE1]
Coordinates
chrLK033118:-:50119..51869
Molecular Weight (calculated)
52482.8 Da
IEP (calculated)
7.460
GRAVY (calculated)
-0.731
Length
470 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSLTMEEKQ LDFNRPLLSV RRPTQASEPE IKPRSSDPVT NKVPPPSSPP VYKSDIKSGP VRNPGTVPFQ WEHQPGKPKD ETKPGLQSFV EPRYVPKLPP
101: GRGREGQVSS VRKPETRFED TYLDAADTLS RSESFFYNCS NVSGHGGTVV EPFGTLSSDR QTQDLMMGRF LPAAKALTSE IPPKAEEPVK EKQNKAGDNQ
201: ICFRSSFGVL NPVPSVRMQA QRAVSVRRMR SKYLDSSNEP VNEDERKLRL NGSVAQGGSL PVESSCTSRT KVSKNFGELL ASDDNTWKPS SESPVAEKTL
301: YVDTVHSLDK MVQEESMEQS LLTEEVQNLI RPGEESVIRD EAFTECTDQA IVALPKSNVV VEVTKEKIDL EANFQRNTRN LESTRLHQRS SYHIVPPPPL
401: PKAPSDSWLK RTLLTIPPKN NSFTWLQSLG ADDNKINQAS PKWETMVKTF NTQQGFVCFS KETLNPIPEA
101: GRGREGQVSS VRKPETRFED TYLDAADTLS RSESFFYNCS NVSGHGGTVV EPFGTLSSDR QTQDLMMGRF LPAAKALTSE IPPKAEEPVK EKQNKAGDNQ
201: ICFRSSFGVL NPVPSVRMQA QRAVSVRRMR SKYLDSSNEP VNEDERKLRL NGSVAQGGSL PVESSCTSRT KVSKNFGELL ASDDNTWKPS SESPVAEKTL
301: YVDTVHSLDK MVQEESMEQS LLTEEVQNLI RPGEESVIRD EAFTECTDQA IVALPKSNVV VEVTKEKIDL EANFQRNTRN LESTRLHQRS SYHIVPPPPL
401: PKAPSDSWLK RTLLTIPPKN NSFTWLQSLG ADDNKINQAS PKWETMVKTF NTQQGFVCFS KETLNPIPEA
001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES
Arabidopsis Description
Protein of unknown function (DUF688) [Source:TAIR;Acc:AT2G30990]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.