Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G29240.1 | CDX67837 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDX71796 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDX89063 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDY41153 | AT3G60600.1 | 21798944 |
| AT1G29240.1 | CDY48365 | AT3G60600.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90178 | Canola | nucleus | 89.63 | 89.98 |
| Bra010842.1-P | Field mustard | nucleus | 84.54 | 82.76 |
| CDY15640 | Canola | mitochondrion, nucleus, plastid | 57.73 | 64.69 |
| CDX94655 | Canola | mitochondrion | 61.06 | 64.2 |
| AT1G29240.1 | Thale cress | nucleus | 65.36 | 57.89 |
| CDY63140 | Canola | nucleus | 43.44 | 45.4 |
| CDY17227 | Canola | nucleus | 42.27 | 44.08 |
| CDY01559 | Canola | nucleus, plastid | 23.68 | 27.13 |
| CDX99449 | Canola | nucleus | 24.46 | 26.48 |
| CDX78880 | Canola | nucleus | 24.27 | 26.0 |
| KRH58978 | Soybean | nucleus | 33.07 | 25.26 |
| CDY06031 | Canola | nucleus | 21.14 | 24.71 |
| KRH11026 | Soybean | nucleus | 32.68 | 24.67 |
| CDX87761 | Canola | nucleus | 20.74 | 24.48 |
| KRH42875 | Soybean | nucleus | 32.29 | 24.44 |
| CDY53997 | Canola | plastid | 19.77 | 23.99 |
| CDY58982 | Canola | nucleus | 23.87 | 22.8 |
| CDY52694 | Canola | nucleus | 20.74 | 22.55 |
| KRH21261 | Soybean | cytosol, mitochondrion, plastid | 17.22 | 22.22 |
| GSMUA_Achr1P04800_001 | Banana | nucleus | 22.5 | 22.07 |
| CDX97772 | Canola | extracellular, vacuole | 23.48 | 21.47 |
| Solyc02g076680.2.1 | Tomato | nucleus | 28.57 | 21.01 |
| PGSC0003DMT400026504 | Potato | nucleus | 28.38 | 20.89 |
| CDY10767 | Canola | nucleus | 17.42 | 20.89 |
| VIT_10s0003g01370.t01 | Wine grape | plastid | 32.29 | 20.83 |
| GSMUA_Achr6P26820_001 | Banana | nucleus | 25.64 | 19.97 |
| GSMUA_Achr9P06400_001 | Banana | nucleus | 25.64 | 19.7 |
| TraesCS3D01G295500.1 | Wheat | nucleus | 24.46 | 18.46 |
| EES01501 | Sorghum | nucleus | 24.85 | 18.46 |
| Zm00001d043395_P002 | Maize | nucleus | 24.27 | 18.24 |
| Os01t0758900-01 | Rice | nucleus | 24.27 | 18.18 |
| TraesCS3A01G306400.2 | Wheat | nucleus | 24.46 | 17.76 |
| TraesCS3B01G330200.2 | Wheat | cytosol, nucleus, plastid | 24.46 | 17.53 |
Protein Annotations
| EnsemblPlants:CDY43328 | EnsemblPlantsGene:GSBRNA2T00076377001 | InterPro:DUF688 | PANTHER:PTHR33671 | PANTHER:PTHR33671:SF3 | PFAM:PF05097 |
| ProteinID:CDY43328 | ProteinID:CDY43328.1 | SEG:seg | UniParc:UPI0004EEB764 | UniProt:A0A078I2G5 | MapMan:35.2 |
Description
BnaC03g59000DBnaC03g59000D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I2G5]
Coordinates
chrLK032552:+:117297..119989
Molecular Weight (calculated)
57607.5 Da
IEP (calculated)
8.037
GRAVY (calculated)
-0.834
Length
511 amino acids
Sequence
(BLAST)
(BLAST)
001: MAERKLNLEA PLLSTRRMQK TSSVSVRRNK TFDFTHDDTS SVPALIPDMG LDHFTDSASV PFTWEQAPGK LKGNDSTTPQ EVFTPCLPPG KAIDRNLSSK
101: TKQVDEEEEE SEDVFSDARD TLSPKDSFSV NHSISGVSGY GVVVAEKKKT LNPSEDPQSR DFMLNRFLPA AKAMTVEQSH YALNRKPSTC MSEPTLQIRE
201: LVPEEKRQTS KRYDESIVLP CYDHQGIDGE ESDEDDGEVS EYAYLPRRGC GMLPQLCFKE SLGMLNTVPG FKTKRNDQVK SSKVSQLKSR FQSVKQLALD
301: SVSKHKLSGK VQSPVHPSMG KKFNSESNLT CAASRSSSPY RHPRCMSPFR TANATCFHDT RKETENLRAN RLNKHIRNIS SSQELLYSKD NGSTSSLLEK
401: AVYVDIEEAE KKQDTNLELE DFENISIKSG KDRSPLAPPS PKKPSESWLW HNLPSVTSQI PSRRYPFHPQ KESLNGNTRN VSKWETIVKT SYMHRDHIRF
501: SEELVAHTSL P
101: TKQVDEEEEE SEDVFSDARD TLSPKDSFSV NHSISGVSGY GVVVAEKKKT LNPSEDPQSR DFMLNRFLPA AKAMTVEQSH YALNRKPSTC MSEPTLQIRE
201: LVPEEKRQTS KRYDESIVLP CYDHQGIDGE ESDEDDGEVS EYAYLPRRGC GMLPQLCFKE SLGMLNTVPG FKTKRNDQVK SSKVSQLKSR FQSVKQLALD
301: SVSKHKLSGK VQSPVHPSMG KKFNSESNLT CAASRSSSPY RHPRCMSPFR TANATCFHDT RKETENLRAN RLNKHIRNIS SSQELLYSKD NGSTSSLLEK
401: AVYVDIEEAE KKQDTNLELE DFENISIKSG KDRSPLAPPS PKKPSESWLW HNLPSVTSQI PSRRYPFHPQ KESLNGNTRN VSKWETIVKT SYMHRDHIRF
501: SEELVAHTSL P
001: MEERKLNFSV PLLSTRRMQK TAGVSVRRNK SNNFTDYDSK TSECPSVPVL VPYMMGLDDE VTEPASVPFT WEQAPGRLKG NDFKPQVCVL MKEEEQVFTP
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
101: CLPPGKAVDA NMTRLQSSKG KQVEESDDDE DDVFSDALDT LSPKDSFSFN NSISGVSEYG GVETKKPLDA QSRDFMMSRF LPAAKAMTVE QSHYASNRKP
201: STFMAEPTIQ IRELVPGEKQ QTPNRYDVSI VPSYYYHQDI DDEESKVGEE DDEVSEYAYL SKRGCGMLPQ LCFKDSLGML NTVPGFKAKH NSPITSPSHD
301: QVKSSKVAQL KYRFQSVKKL ALDSVSKHKL SGKVHSPVHP SNGKKFNSES NLISAAKRSS SPYRHSRCMS PFRSTGNGSP LHHAGFPETR RETENLRANR
401: LSNHTRNISR TSQELLYPKS NGSILEKTVY VDTENDHMTN DQHNSNLMIF PEEADMTGRK PDANPELEAF ENISIRSSEM VKGNELVEIS SGFDRSPLAP
501: PSPKRPSESW LCHNLPSVTS QITSRRYHPF NPQKQDLTEN YRNGTKWETI VKTSYMHRDH IRYSEELVAH TSHQSKT
Arabidopsis Description
F28N24.8 protein [Source:UniProtKB/TrEMBL;Acc:Q9LP52]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.