Factsheet for Solyc02g076680.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g008950.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc06g072990.1.1
Solyc09g090230.1.1
Solyc09g090240.1.1
Solyc10g077010.1.1
Solyc10g081170.1.1
Solyc11g072240.1.1
Solyc12g099990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18630.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT4G18630.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT4G18630.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT4G18630.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT4G18630.1	Solyc01g008950.2.1	AT5G21274.1	17360592
AT4G18630.1	Solyc10g077010.1.1	AT5G21274.1	17360592
AT4G18630.1	Solyc10g081170.1.1	AT5G21274.1	17360592
AT4G18630.1	Solyc11g072240.1.1	AT5G21274.1	17360592
AT4G18630.1	Solyc12g099990.1.1	AT5G21274.1	17360592
AT4G18630.1	Solyc09g090230.1.1	AT5G43320.1	21798944
AT4G18630.1	Solyc09g090240.1.1	AT5G43320.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026504	Potato	nucleus	95.68	95.82
VIT_10s0003g01370.t01	Wine grape	plastid	38.13	33.46
KRH42875	Soybean	nucleus	29.93	30.81
KRH11026	Soybean	nucleus	29.93	30.72
Bra030129.1-P	Field mustard	mitochondrion, nucleus, plastid	21.3	30.45
CDX94655	Canola	mitochondrion	21.3	30.45
AT2G34170.3	Thale cress	nucleus	22.88	30.4
KRH58978	Soybean	nucleus	29.21	30.34
CDY15640	Canola	mitochondrion, nucleus, plastid	19.86	30.26
Bra010842.1-P	Field mustard	nucleus	22.3	29.69
CDX90178	Canola	nucleus	21.44	29.27
Solyc07g055140.2.1	Tomato	nucleus	14.82	29.26
CDY63140	Canola	nucleus	20.29	28.83
CDY17227	Canola	nucleus	20.29	28.78
CDY43328	Canola	nucleus	21.01	28.57
GSMUA_Achr1P04800_001	Banana	nucleus	21.01	28.02
KRH21261	Soybean	cytosol, mitochondrion, plastid	15.83	27.78
AT1G29240.1	Thale cress	nucleus	23.02	27.73
Bra021994.1-P	Field mustard	nucleus	15.83	26.76
Bra005448.1-P	Field mustard	nucleus	20.14	26.57
CDY06031	Canola	nucleus	15.97	25.4
AT4G18630.1	Thale cress	nucleus	17.27	25.05
GSMUA_Achr6P26820_001	Banana	nucleus	23.6	25.0
CDX99449	Canola	nucleus	16.98	25.0
AT5G45850.1	Thale cress	nucleus	15.83	24.72
CDX87761	Canola	nucleus	15.25	24.48
Solyc12g013960.1.1	Tomato	nucleus	21.58	24.43
GSMUA_Achr9P06400_001	Banana	nucleus	23.17	24.21
CDX78880	Canola	nucleus	16.55	24.11
Bra013335.1-P	Field mustard	nucleus	16.4	24.0
CDY01559	Canola	nucleus, plastid	15.4	23.99
Bra012583.1-P	Field mustard	plastid	15.54	23.89
TraesCS3D01G295500.1	Wheat	nucleus	21.44	22.01
CDY53997	Canola	plastid	13.24	21.85
TraesCS3A01G306400.2	Wheat	nucleus	21.87	21.59
Os01t0758900-01	Rice	nucleus	20.29	20.67
Zm00001d043395_P002	Maize	nucleus	20.14	20.59
TraesCS3B01G330200.2	Wheat	cytosol, nucleus, plastid	20.72	20.2
EES01501	Sorghum	nucleus	19.71	19.91

Protein Annotations

EnsemblPlants:Solyc02g076680.2.1	EnsemblPlantsGene:Solyc02g076680.2	InterPro:DUF688	PANTHER:PTHR33671	PANTHER:PTHR33671:SF3	PFAM:PF05097
SEG:seg	UniParc:UPI0002767775	UniProt:K4B8P5	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr2:-:41824342..41827096

Molecular Weight (calculated)

77078.2 Da

IEP (calculated)

9.875

GRAVY (calculated)

-0.738

Length

695 amino acids

Sequence
(BLAST)

001: MAKKQLDFNA PLLSVRKIAS SLAPNERALN KKTEDKVPPN RQQSLPVKKS DWELSEVTKP VAVPFVWEKI PGRPKDDNEA RTSLRVERSS SPRLPPGRLP
101: ETVRFYSGER PRTHNIYRSP AEGIPWMDHA ALLDSLVESI YTRGDRESED DDYSDGPETM SPTESLSLNC SVSGLSGHQT SDLQPSGTFS IDSQTRDFMM
201: NRFLPAAKAV VLETPQYVHK KPVSAEQPMP VKKLVPVERK PLVKPLESNP VSYYSSHPAD AGSETEDDVP ENSDKKPSKG WKFFPRICVK NSLCLLNPLP
301: GLKVKTRAPT PSPQAVKRVS GTKPKMAQSP TSYAHEVKKL TRKAYSGPLE KNACDTINKQ RFHSGVLSRE LYKADNRSLS GQLSNPNDSC KLVGISPGRR
401: SRSGAISPYR NVAPPSPFNE GTRFLGVPKE MESLWASRFD SFRKGCYTVK DKAVPQRMGT GKFFDSPSEV VEKTLYIDSV ANVRISAPNA ASLKPKGIVN
501: SPDKNMKTLV ENRKVLENLA AMSPIQGARH TDVLEKNSKQ IVEKEFSLDL IEASSISIST HKGPADQELL KLKQNVDTVS GALESSKVHP CGNLGTENED
601: NQNAKDSKDS NLNSLDSTLP PPLPKSPSES WLWRTLPSIP LRTPFLSFNS KKQNQKSHTD GTKWETIVKT SNLHKDHVRY SEELYTLGSC QQSKS

Best Arabidopsis Sequence Match ( AT2G30990.2 )
(BLAST)

001: MLMGSLMMEE KQLDFNRPLI SIRRPTQTSE SESKTRSFDS VTNMIPPSPP VYKSDIKSGP VRNPGTVPFQ WEHKPGKPKD ERKPVLQSFV EPHFVPKLPP
101: GRERVVELGR KPESTGADHQ TKTVSSSDKY LVEDAKSNSS RYDDDDDDSD GTYLDATDTL SRTESFFFNC SAVSGASGLD GSGILVEPFG TLSTDRQTQD
201: LMMGRFLPAA KALTSESPPH LARKPPKPEE PVKQLMKKKQ NKVEQNPYRF RHSPDQEEED GNISSMMASG VCGLLPQLCL RSSLGLLNPV PSVRMQQQRA
301: VSVRRMRSKY QDSAPSNETH NKQNEDKRKL KLIESVAKGS SQGESLSVSS IPQGKEKLEN VGTASRSKIS KNFGELLASD ENTWEPSSET PVAEKTLYVD
401: IVHLVDKKVQ EESKKQPILK ESPSLDIVPV KDEEADISQP KSIEQENGNR DEDFTKFSSQ KVEECPDHQA IVALPESDVV EITKEKKIDL EVQLQVITTN
501: IESSRLHHRS SYLIVPPPPL PKAPSDSWLK RTLPTIPPKN NSFAWLQSLG TDDDNHFTKT QANPKWETMV KTSNTQQGFV CFSKETLNPI PES

Arabidopsis Description

Protein of unknown function (DUF688) [Source:TAIR;Acc:AT2G30990]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.