Factsheet for Solyc06g072990.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g057780.2.1
Solyc01g073920.2.1
Solyc01g088490.2.1
Solyc01g107290.2.1
Solyc02g014090.2.1
Solyc02g062160.1.1
Solyc02g063150.2.1
Solyc02g077840.1.1
Solyc02g079770.2.1
Solyc02g085950.2.1
Solyc02g087250.2.1
Solyc02g091710.2.1
Solyc03g013310.2.1
Solyc03g031460.1.1
Solyc03g034220.2.1
Solyc03g097950.2.1
Solyc03g113480.1.1
Solyc03g117290.1.1
Solyc05g053220.2.1
Solyc05g053470.2.1
Solyc05g055230.1.1
Solyc06g007630.1.1
Solyc06g009270.2.1
Solyc06g054260.1.1
Solyc06g054580.2.1
Solyc06g065340.1.1
Solyc06g068330.1.1
Solyc06g071280.2.1
Solyc06g072470.2.1
Solyc06g073510.2.1
Solyc07g006160.2.1
Solyc07g006580.2.1
Solyc07g042170.2.1
Solyc08g044250.1.1
Solyc09g005030.1.1
Solyc09g091180.2.1
Solyc10g044710.1.1
Solyc10g076460.1.1
Solyc10g079430.1.1
Solyc10g080400.1.1
Solyc10g083190.1.1
Solyc11g006690.1.1
Solyc11g018710.1.1
Solyc11g039960.1.1
Solyc12g009220.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49580.1	Solyc01g088490.2.1	AT1G06270.1	21798944
AT3G49580.1	Solyc02g079770.2.1	AT1G11430.1	21798944
AT3G49580.1	Solyc07g042170.2.1	AT1G19180.1	21798944
AT3G49580.1	Solyc12g009220.1.1	AT1G19180.1	21798944
AT3G49580.1	Solyc02g077840.1.1	AT1G28360.1	21798944
AT3G49580.1	Solyc01g107290.2.1	AT1G49850.1	21798944
AT3G49580.1	Solyc06g065340.1.1	AT1G71970.1	21798944
AT3G49580.1	Solyc11g018710.1.1	AT1G71970.1	21798944
AT3G49580.1	Solyc03g113480.1.1	AT1G77400.1	21798944
AT3G49580.1	Solyc05g055230.1.1	AT2G04390.1	21798944
AT3G49580.1	Solyc11g006690.1.1	AT2G04390.1	21798944
AT3G49580.1	Solyc02g062160.1.1	AT2G17880.1	21798944
AT3G49580.1	Solyc05g053470.2.1	AT2G33210.1	21798944
AT3G49580.1	Solyc09g091180.2.1	AT2G33210.1	21798944
AT3G49580.1	Solyc09g005030.1.1	AT2G38300.1	21798944
AT3G49580.1	Solyc10g076460.1.1	AT2G38300.1	21798944
AT3G49580.1	Solyc02g087250.2.1	AT3G01370.1	21798944
AT3G49580.1	Solyc08g044250.1.1	AT3G01370.1	21798944
AT3G49580.1	Solyc10g044710.1.1	AT3G05625.1	21798944
AT3G49580.1	Solyc06g007630.1.1	AT3G07480.1	21798944
AT3G49580.1	Solyc03g031460.1.1	AT3G13160.1	21798944
AT3G49580.1	Solyc06g071280.2.1	AT3G48090.1	21798944
AT3G49580.1	Solyc10g079430.1.1	AT3G60360.1	21798944
AT3G49580.1	Solyc06g054260.1.1	AT4G02770.1	21798944
AT3G49580.1	Solyc07g006160.2.1	AT4G30490.1	21798944
AT3G49580.1	Solyc03g117290.1.1	AT5G11090.1	21798944
AT3G49580.1	Solyc06g068330.1.1	AT5G11090.1	21798944
AT3G49580.1	Solyc02g014090.2.1	AT5G23130.1	21798944
AT3G49580.1	Solyc11g039960.1.1	AT5G23130.1	21798944
AT3G49580.1	Solyc02g063150.2.1	AT5G38420.1	21798944
AT3G49580.1	Solyc02g085950.2.1	AT5G38420.1	21798944
AT3G49580.1	Solyc03g034220.2.1	AT5G38420.1	21798944
AT3G49580.1	Solyc03g013310.2.1	AT5G39400.1	21798944
AT3G49580.1	Solyc03g097950.2.1	AT5G65220.1	21798944
AT3G49580.1	Solyc06g072470.2.1	AT5G65220.1	21798944
AT3G49580.1	Solyc02g091710.2.1	AT5G65683.1	21798944
AT5G24660.1	Solyc02g077840.1.1	AT1G28360.1	21798944
AT5G24660.1	Solyc05g053220.2.1	AT1G54770.1	21798944
AT5G24660.1	Solyc06g009270.2.1	AT2G18730.1	21798944
AT5G24660.1	Solyc07g006580.2.1	AT2G18730.1	21798944
AT5G24660.1	Solyc01g073920.2.1	AT2G32840.1	21798944
AT5G24660.1	Solyc06g073510.2.1	AT2G37560.1	21798944
AT5G24660.1	Solyc06g054580.2.1	AT2G39100.1	21798944
AT5G24660.1	Solyc10g080400.1.1	AT2G42260.1	21798944
AT5G24660.1	Solyc10g083190.1.1	AT3G11590.1	21798944
AT5G24660.1	Solyc06g054260.1.1	AT4G02770.1	21798944
AT5G24660.1	Solyc03g117290.1.1	AT5G11090.1	21798944
AT5G24660.1	Solyc06g068330.1.1	AT5G11090.1	21798944
AT5G24660.1	Solyc01g057780.2.1	AT5G17790.1	21798944
AT5G24660.1	Solyc02g091710.2.1	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400069515	Potato	cytosol	81.58	82.3
Solyc03g096780.1.1	Tomato	nucleus	66.67	67.26
Solyc03g096770.1.1	Tomato	nucleus	65.79	65.22
Solyc03g096760.1.1	Tomato	plastid	57.89	58.93
Bra017974.1-P	Field mustard	cytosol	36.84	48.84
KRH53667	Soybean	cytosol, extracellular, nucleus	49.12	46.67
AT3G49570.1	Thale cress	cytosol	39.47	46.39
CDY08148	Canola	cytosol	37.72	46.24
KRH64261	Soybean	nucleus	48.25	45.45
Bra020466.1-P	Field mustard	nucleus	38.6	45.36
CDY05452	Canola	cytosol, nucleus, plastid	38.6	45.36
AT5G24660.1	Thale cress	cytosol, nucleus, plastid	36.84	44.68
AT5G24655.1	Thale cress	cytosol	35.96	44.57
CDY05402	Canola	nucleus	37.72	44.33
CDY08146	Canola	cytosol	36.84	43.3
Bra017975.1-P	Field mustard	cytosol	36.84	43.3
CDX80461	Canola	cytosol, nucleus, plastid	34.21	41.94
VIT_16s0098g00600.t01	Wine grape	cytosol, nucleus, plastid	50.0	41.61
KRH16959	Soybean	nucleus	42.11	41.03
CDY69515	Canola	cytosol, nucleus, plastid	33.33	40.86
Bra009783.1-P	Field mustard	cytosol, nucleus, plastid	33.33	40.86
AT3G49580.1	Thale cress	cytosol, nucleus, plastid	33.33	40.43

Protein Annotations

EnsemblPlants:Solyc06g072990.1.1	EnsemblPlantsGene:Solyc06g072990.1	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0033554
ncoils:Coil	PANTHER:PTHR34283	PANTHER:PTHR34283:SF1	SEG:seg	UniParc:UPI0002765BBD	UniProt:K4C919
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr6:+:44986507..44986851

Molecular Weight (calculated)

12897.5 Da

IEP (calculated)

4.792

GRAVY (calculated)

-0.634

Length

114 amino acids

Sequence
(BLAST)

001: MAPTIATTLS FCAQSKPAGG EISGVPESEM LRKRNEELED ELKKSVEREE KMKEELEKTR RRVKVAEEAE ERLCFQLGEL EAEAVDEARA YRARVVNLME
101: QLSAVQKLLL SASK

Best Arabidopsis Sequence Match ( AT5G24660.1 )
(BLAST)

1: MGKGGNYVTV AASEVDELRR KNGEMEKAVE EMKKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YHSRIIFLMN ELSRLSSDSA SASP

Arabidopsis Description

LSU2Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.