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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra001158.1-P
Bra001492.1-P
Bra002983.1-P
Bra003902.1-P
Bra005124.1-P
Bra005514.1-P
Bra005820.1-P
Bra007528.1-P
Bra008000.1-P
Bra008305.1-P
Bra008537.1-P
Bra009431.1-P
Bra010881.1-P
Bra013019.1-P
Bra014221.1-P
Bra014494.1-P
Bra015488.1-P
Bra015670.1-P
Bra016094.1-P
Bra016480.1-P
Bra016835.1-P
Bra018085.1-P
Bra019853.1-P
Bra021836.1-P
Bra022931.1-P
Bra024072.1-P
Bra024367.1-P
Bra024408.1-P
Bra025431.1-P
Bra025713.1-P
Bra028174.1-P
Bra028181.1-P
Bra028240.1-P
Bra028406.1-P
Bra028552.1-P
Bra028778.1-P
Bra029651.1-P
Bra030094.1-P
Bra031849.1-P
Bra031870.1-P
Bra032898.1-P
Bra033774.1-P
Bra033775.1-P
Bra036240.1-P
Bra037247.1-P
Bra039123.1-P
Bra039373.1-P
Bra039652.1-P
Bra040872.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G49580.1 Bra015488.1-P AT1G06270.1 21798944
AT3G49580.1 Bra016835.1-P AT1G11430.1 21798944
AT3G49580.1 Bra019853.1-P AT1G11430.1 21798944
AT3G49580.1 Bra025713.1-P AT1G19180.1 21798944
AT3G49580.1 Bra010881.1-P AT1G28360.1 21798944
AT3G49580.1 Bra030094.1-P AT1G28360.1 21798944
AT3G49580.1 Bra032898.1-P AT1G28360.1 21798944
AT3G49580.1 Bra014221.1-P AT1G49850.1 21798944
AT3G49580.1 Bra039652.1-P AT1G49850.1 21798944
AT3G49580.1 Bra003902.1-P AT1G71970.1 21798944
AT3G49580.1 Bra008000.1-P AT1G71970.1 21798944
AT3G49580.1 Bra016094.1-P AT1G71970.1 21798944
AT3G49580.1 Bra008305.1-P AT1G77400.1 21798944
AT3G49580.1 Bra015670.1-P AT1G77400.1 21798944
AT3G49580.1 Bra002983.1-P AT2G04390.1 21798944
AT3G49580.1 Bra005820.1-P AT2G04390.1 21798944
AT3G49580.1 Bra009431.1-P AT2G04390.1 21798944
AT3G49580.1 Bra028778.1-P AT2G04390.1 21798944
AT3G49580.1 Bra037247.1-P AT2G17880.1 21798944
AT3G49580.1 Bra040872.1-P AT2G17880.1 21798944
AT3G49580.1 Bra005514.1-P AT2G33210.1 21798944
AT3G49580.1 Bra021836.1-P AT2G33210.1 21798944
AT3G49580.1 Bra022931.1-P AT2G33210.1 21798944
AT3G49580.1 Bra005124.1-P AT2G38300.1 21798944
AT3G49580.1 Bra039123.1-P AT3G01370.1 21798944
AT3G49580.1 Bra001158.1-P AT3G05625.1 21798944
AT3G49580.1 Bra016480.1-P AT3G07480.1 21798944
AT3G49580.1 Bra029651.1-P AT3G07480.1 21798944
AT3G49580.1 Bra001492.1-P AT3G13160.1 21798944
AT3G49580.1 Bra039373.1-P AT3G13160.1 21798944
AT3G49580.1 Bra018085.1-P AT3G48090.1 21798944
AT3G49580.1 Bra033774.1-P AT3G48090.1 21798944
AT3G49580.1 Bra033775.1-P AT3G48090.1 21798944
AT3G49580.1 Bra007528.1-P AT3G60360.1 21798944
AT3G49580.1 Bra014494.1-P AT3G60360.1 21798944
AT3G49580.1 Bra036240.1-P AT4G02770.1 21798944
AT3G49580.1 Bra024072.1-P AT4G30490.1 21798944
AT3G49580.1 Bra028552.1-P AT5G11090.1 21798944
AT3G49580.1 Bra008537.1-P AT5G23130.1 21798944
AT3G49580.1 Bra013019.1-P AT5G23130.1 21798944
AT3G49580.1 Bra025431.1-P AT5G38420.1 21798944
AT3G49580.1 Bra028174.1-P AT5G38420.1 21798944
AT3G49580.1 Bra028181.1-P AT5G38420.1 21798944
AT3G49580.1 Bra028406.1-P AT5G38420.1 21798944
AT3G49580.1 Bra028240.1-P AT5G39400.1 21798944
AT3G49580.1 Bra024367.1-P AT5G65220.1 21798944
AT3G49580.1 Bra031870.1-P AT5G65220.1 21798944
AT3G49580.1 Bra024408.1-P AT5G65683.1 21798944
AT3G49580.1 Bra031849.1-P AT5G65683.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY08148 Canola cytosol 98.84 91.4
AT3G49580.1 Thale cress cytosol, nucleus, plastid 79.07 72.34
Bra017975.1-P Field mustard cytosol 75.58 67.01
Bra009783.1-P Field mustard cytosol, nucleus, plastid 67.44 62.37
Bra020466.1-P Field mustard nucleus 66.28 58.76
Solyc03g096780.1.1 Tomato nucleus 53.49 40.71
PGSC0003DMT400001474 Potato plastid 52.33 38.46
KRH53667 Soybean cytosol, extracellular, nucleus 52.33 37.5
PGSC0003DMT400001476 Potato plastid 48.84 37.5
PGSC0003DMT400001475 Potato plastid 51.16 37.29
KRH64261 Soybean nucleus 52.33 37.19
Solyc06g072990.1.1 Tomato cytosol, plastid 48.84 36.84
Solyc03g096760.1.1 Tomato plastid 47.67 36.61
Solyc03g096770.1.1 Tomato nucleus 48.84 36.52
PGSC0003DMT400069515 Potato cytosol 47.67 36.28
KRH16959 Soybean nucleus 41.86 30.77
VIT_16s0098g00600.t01 Wine grape cytosol, nucleus, plastid 46.51 29.2
Protein Annotations
EnsemblPlants:Bra017974.1EnsemblPlants:Bra017974.1-PEnsemblPlantsGene:Bra017974GO:GO:0006950GO:GO:0007154GO:GO:0008150
GO:GO:0009605GO:GO:0009628GO:GO:0009651GO:GO:0009987GO:GO:0009991GO:GO:0010438
GO:GO:0033554ncoils:CoilPANTHER:PTHR34283PANTHER:PTHR34283:SF1SEG:segUniParc:UPI000253F1AC
UniProt:M4DN87MapMan:35.2::::
Description
AT3G49570 (E=5e-019) LSU3 | LSU3 (RESPONSE TO LOW SULFUR 3)
Coordinates
chrA06:+:9196665..9196925
Molecular Weight (calculated)
10178.1 Da
IEP (calculated)
4.289
GRAVY (calculated)
-0.495
Length
86 amino acids
Sequence
(BLAST)
1: MTVAAEEMEE LRRRSRELER EVEEMKTAML ELWRRTVMAE EAEERLCSQL AELEVESLDQ ARDYHDRVVF LMDQISRLSS LSIVSS
Best Arabidopsis Sequence Match ( AT3G49580.1 )
(BLAST)
1: MANRGGCVTV AAEEMDELRR RNIELSREVA EMKTEMIKLW QRTVVAEEAE EQLCSQLAEL EVESLEQARD YHDRMLFLMD QISRLSSSSV VSSS
Arabidopsis Description
LSU1LSU1 [Source:UniProtKB/TrEMBL;Acc:A0A178VF66]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.