Factsheet for Bra005124.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005398.1-P
Bra009783.1-P
Bra012532.1-P
Bra012650.1-P
Bra013423.1-P
Bra020466.1-P
Bra021926.1-P
Bra032176.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38300.1	Bra032176.1-P	AT2G23290.1	21798944
AT2G38300.1	Bra005398.1-P	AT2G34710.1	21798944
AT2G38300.1	Bra021926.1-P	AT2G34710.1	21798944
AT2G38300.1	Bra012650.1-P	AT4G17680.1	21798944
AT2G38300.1	Bra012532.1-P	AT4G19700.1	21798944
AT2G38300.1	Bra013423.1-P	AT4G19700.1	21798944
AT2G38300.1	Bra009783.1-P	AT5G24660.1	21798944
AT2G38300.1	Bra020466.1-P	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74898	Canola	nucleus	98.22	96.78
CDX91442	Canola	nucleus	97.03	93.43
AT2G38300.1	Thale cress	nucleus	82.2	81.47
Bra018498.1-P	Field mustard	mitochondrion	13.06	61.97
VIT_08s0058g00250.t01	Wine grape	nucleus	19.88	57.76
Solyc09g005030.1.1	Tomato	nucleus	22.26	51.37
Solyc10g076460.1.1	Tomato	nucleus	32.05	35.76
PGSC0003DMT400041071	Potato	nucleus	32.05	35.76
Bra026202.1-P	Field mustard	nucleus	20.18	34.0
PGSC0003DMT400068508	Potato	nucleus	31.75	32.72
KRH65638	Soybean	nucleus	33.53	32.66
KRH75999	Soybean	nucleus	33.23	32.65
KRH49433	Soybean	nucleus	34.42	31.69
KRH00305	Soybean	nucleus	33.83	30.89
Bra026818.1-P	Field mustard	nucleus	21.36	30.0
Bra029503.1-P	Field mustard	mitochondrion	15.13	29.65
Bra000180.1-P	Field mustard	nucleus	33.83	29.31
Bra026618.1-P	Field mustard	nucleus	22.26	28.63
Bra024836.1-P	Field mustard	nucleus	21.36	27.8
Bra004973.1-P	Field mustard	nucleus	33.53	27.76
Bra021038.1-P	Field mustard	plastid	13.65	25.7
Bra000270.1-P	Field mustard	nucleus	18.4	21.53
Bra017425.1-P	Field mustard	nucleus	11.57	19.7
Bra017021.1-P	Field mustard	nucleus	20.77	19.23
Bra040176.1-P	Field mustard	nucleus	15.73	16.72
Bra023254.1-P	Field mustard	nucleus	17.8	16.39
Bra033844.1-P	Field mustard	nucleus	17.8	15.31
Bra008613.1-P	Field mustard	nucleus	13.06	15.12
Bra023570.1-P	Field mustard	cytosol	14.84	12.56
Bra035311.1-P	Field mustard	nucleus	16.91	9.13
Bra006360.1-P	Field mustard	nucleus	9.79	4.5

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.2.3	EnsemblPlantsGene:Bra005124	EnsemblPlants:Bra005124.1	EnsemblPlants:Bra005124.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:IPR017930	UniProt:M4CLN7	InterPro:Myb_dom
InterPro:Myb_dom_plants	PFAM:PF00249	PFscan:PS51294	PANTHER:PTHR31314	PANTHER:PTHR31314:SF41	InterPro:SANT/Myb
SUPFAM:SSF46689	TIGRFAMs:TIGR01557	UniParc:UPI00025477AF	SEG:seg	:	:

Description

AT2G38300 (E=7e-129) | DNA binding / transcription factor

Coordinates

chrA05:+:3555616..3557088

Molecular Weight (calculated)

38655.0 Da

IEP (calculated)

8.638

GRAVY (calculated)

-0.965

Length

337 amino acids

Sequence
(BLAST)

001: MIPNMEGSVK TTDREEEEEE EEEEGEGEES KVSSNTTVEA EVGKKTKVRP YVRSKVPRLR WTPDLHLRFV RAVERLGGQE RATPKLVRQM MNIKGLSIAH
101: VKSHLQMYRS KKMDDQGQAI ADNRHFIESS TDRNIYKLSQ LPMFRGYNTN HSHDSPFRYG SRFSNASLWN SSSHETNRSL IDRTGLIRGS SVNNNIHGSE
201: YWTNNRSFQN TYSSSVSNHL PKLRHNHQER NNLATFNSIQ GHSRTFEKFE TGIEERTNHV YCTKTTGKRN ASTSLDLDLS LKLRVPEETT LEETETATTD
301: QTLSLSLCSW KKSRVIKTDE EDRTVKIGQA STLDLTL

Best Arabidopsis Sequence Match ( AT2G38300.1 )
(BLAST)

001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL

Arabidopsis Description

Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.