Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra005124.1-P | Field mustard | nucleus | 96.78 | 98.22 |
| CDX91442 | Canola | nucleus | 97.37 | 95.14 |
| AT2G38300.1 | Thale cress | nucleus | 80.99 | 81.47 |
| CDY71094 | Canola | mitochondrion | 14.62 | 62.5 |
| VIT_08s0058g00250.t01 | Wine grape | nucleus | 19.59 | 57.76 |
| Solyc09g005030.1.1 | Tomato | nucleus | 21.93 | 51.37 |
| Solyc10g076460.1.1 | Tomato | nucleus | 31.58 | 35.76 |
| PGSC0003DMT400041071 | Potato | nucleus | 31.58 | 35.76 |
| CDY00733 | Canola | mitochondrion, nucleus | 14.33 | 34.51 |
| PGSC0003DMT400068508 | Potato | nucleus | 31.29 | 32.72 |
| KRH65638 | Soybean | nucleus | 33.04 | 32.66 |
| KRH75999 | Soybean | nucleus | 32.75 | 32.65 |
| KRH49433 | Soybean | nucleus | 33.92 | 31.69 |
| KRH00305 | Soybean | nucleus | 33.33 | 30.89 |
| CDY59419 | Canola | nucleus | 21.05 | 30.0 |
| CDX81654 | Canola | nucleus | 21.05 | 29.75 |
| CDX82805 | Canola | nucleus | 21.05 | 29.75 |
| CDY16660 | Canola | mitochondrion | 14.91 | 29.48 |
| CDX94559 | Canola | mitochondrion | 14.91 | 29.48 |
| CDY52431 | Canola | nucleus | 33.33 | 29.31 |
| CDY45272 | Canola | nucleus | 21.05 | 29.15 |
| CDY69225 | Canola | mitochondrion | 14.04 | 29.09 |
| CDY07612 | Canola | nucleus | 33.33 | 29.08 |
| CDY41090 | Canola | nucleus | 20.76 | 28.74 |
| CDY09392 | Canola | nucleus | 21.93 | 28.63 |
| CDY70922 | Canola | nucleus | 21.64 | 28.57 |
| CDX74803 | Canola | nucleus | 31.87 | 28.39 |
| CDY07070 | Canola | nucleus | 34.5 | 28.37 |
| CDX93206 | Canola | nucleus | 34.5 | 28.23 |
| CDY42825 | Canola | nucleus | 26.61 | 27.83 |
| CDY18860 | Canola | nucleus | 33.04 | 27.76 |
| CDY17617 | Canola | nucleus | 21.05 | 27.69 |
| CDY67147 | Canola | nucleus | 26.32 | 27.52 |
| CDY17443 | Canola | nucleus | 21.05 | 27.27 |
| CDX97319 | Canola | mitochondrion | 16.37 | 27.05 |
| CDY04115 | Canola | nucleus | 20.18 | 25.46 |
| CDX84102 | Canola | nucleus | 15.79 | 19.93 |
| CDY54255 | Canola | nucleus | 17.25 | 19.73 |
| CDY23916 | Canola | nucleus | 15.2 | 19.55 |
| CDY68011 | Canola | nucleus | 10.82 | 17.54 |
| CDY04116 | Canola | nucleus | 10.23 | 17.24 |
| CDY35557 | Canola | nucleus | 16.67 | 17.07 |
| CDX78794 | Canola | nucleus | 15.5 | 16.99 |
| CDX93847 | Canola | nucleus | 16.67 | 16.86 |
| CDY43006 | Canola | nucleus | 16.37 | 16.47 |
| CDY69675 | Canola | cytosol, nucleus | 5.56 | 16.38 |
| CDY01293 | Canola | nucleus | 16.37 | 16.18 |
| CDY28659 | Canola | nucleus | 13.16 | 14.75 |
| CDX69443 | Canola | nucleus | 15.5 | 13.49 |
| CDY67252 | Canola | nucleus | 15.5 | 13.45 |
| CDX70701 | Canola | nucleus | 14.91 | 13.25 |
| CDX78699 | Canola | nucleus | 14.91 | 13.21 |
| CDY38105 | Canola | nucleus | 14.91 | 12.81 |
| CDX85500 | Canola | nucleus | 14.91 | 12.78 |
| CDY02401 | Canola | nucleus | 16.67 | 9.13 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.2.3 | GO:A0A078CIL4 | EnsemblPlants:CDX74898 | ProteinID:CDX74898 | ProteinID:CDX74898.1 |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | EnsemblPlantsGene:GSBRNA2T00116897001 |
| InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:Myb_dom_plants | PFAM:PF00249 | PFscan:PS51294 |
| PANTHER:PTHR31314 | PANTHER:PTHR31314:SF41 | InterPro:SANT/Myb | SUPFAM:SSF46689 | TIGRFAMs:TIGR01557 | UniParc:UPI0004EE9A3F |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g06440D
Coordinates
chrLK031802:+:1318569..1320274
Molecular Weight (calculated)
39204.5 Da
IEP (calculated)
7.015
GRAVY (calculated)
-0.985
Length
342 amino acids
Sequence
(BLAST)
(BLAST)
001: MIPSMDGSGK TTDREEEEEE EEEEEEEEDG EGEESKVSSN TTVEAEVGKK TKVRPYVRSK VPRLRWTPDL HLRFVRAVER LGGQERATPK LVRQMMNIKG
101: LSIAHVKSHL QMYRSKKMDD QGQAIADNRH FIESSTDRNI YKLSQLPMFR GYNTNHSHDS PFRYGSRFSN ASLWNSSSHE TNRSLIDRTG LIRGSSVSNN
201: IHVSEYWTNN RSFQNTYSSS VSNHLPKVRH NHQERNNLAT FNSIQGHSRT FEKFETGIEE RTNHVYCTKT TGKRNASTSL DLDLSLKLRV PEETTLEETE
301: TATTDQTLSL SLCSWKKSRV IKTDEEDRTV KIGQASTLDL TL
101: LSIAHVKSHL QMYRSKKMDD QGQAIADNRH FIESSTDRNI YKLSQLPMFR GYNTNHSHDS PFRYGSRFSN ASLWNSSSHE TNRSLIDRTG LIRGSSVSNN
201: IHVSEYWTNN RSFQNTYSSS VSNHLPKVRH NHQERNNLAT FNSIQGHSRT FEKFETGIEE RTNHVYCTKT TGKRNASTSL DLDLSLKLRV PEETTLEETE
301: TATTDQTLSL SLCSWKKSRV IKTDEEDRTV KIGQASTLDL TL
001: MIPSMEGGGK TNREEEEEEE EEEEEGEESK VSSNSTVEES DKKTKVRPYV RSKVPRLRWT PDLHLRFVRA VERLGGQERA TPKLVRQMMN IKGLSIAHVK
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
101: SHLQMYRSKK IDDQGQAIAG HKHLFETSTD RNIYKLSQLP MFRGYNHNHD SPFRYGSKIS NASLWNSSSQ GTERSLIDQI RPGLIRNASV SNNIRGSDYW
201: TNNKSFQNIY SSSISNHFPK LRHDHHERTN SVTFNSIQGH SRTFQKFHNG VEENTNHSYC SKTNGKRDAS RSIDLDLSLK LRQPEKTILE ETETAATTTD
301: QTLSLSLCPG SSSWKKSRLM KDEEDRTVKI GQESTLDLTL
Arabidopsis Description
Myb-like HTH transcriptional regulator family protein [Source:UniProtKB/TrEMBL;Acc:Q8GYE4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.