Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020466.1-P | Field mustard | nucleus | 96.91 | 96.91 |
| CDY05452 | Canola | cytosol, nucleus, plastid | 96.91 | 96.91 |
| AT5G24660.1 | Thale cress | cytosol, nucleus, plastid | 81.44 | 84.04 |
| CDY69515 | Canola | cytosol, nucleus, plastid | 80.41 | 83.87 |
| CDX80461 | Canola | cytosol, nucleus, plastid | 79.38 | 82.8 |
| AT5G24655.1 | Thale cress | cytosol | 77.32 | 81.52 |
| CDY08146 | Canola | cytosol | 65.98 | 65.98 |
| CDY08148 | Canola | cytosol | 59.79 | 62.37 |
| KRH53667 | Soybean | cytosol, extracellular, nucleus | 49.48 | 40.0 |
| Solyc03g096780.1.1 | Tomato | nucleus | 45.36 | 38.94 |
| KRH64261 | Soybean | nucleus | 48.45 | 38.84 |
| Solyc06g072990.1.1 | Tomato | cytosol, plastid | 44.33 | 37.72 |
| PGSC0003DMT400001474 | Potato | plastid | 44.33 | 36.75 |
| PGSC0003DMT400001476 | Potato | plastid | 42.27 | 36.61 |
| Solyc03g096760.1.1 | Tomato | plastid | 42.27 | 36.61 |
| PGSC0003DMT400069515 | Potato | cytosol | 42.27 | 36.28 |
| PGSC0003DMT400001475 | Potato | plastid | 42.27 | 34.75 |
| Solyc03g096770.1.1 | Tomato | nucleus | 39.18 | 33.04 |
| KRH16959 | Soybean | nucleus | 39.18 | 32.48 |
| VIT_16s0098g00600.t01 | Wine grape | cytosol, nucleus, plastid | 40.21 | 28.47 |
Protein Annotations
| EnsemblPlants:CDY05402 | EnsemblPlantsGene:GSBRNA2T00120297001 | ncoils:Coil | PANTHER:PTHR34283 | PANTHER:PTHR34283:SF1 | ProteinID:CDY05402 |
| ProteinID:CDY05402.1 | SEG:seg | UniParc:UPI0004EB432E | MapMan:35.1 | : | : |
Description
BnaC02g41100D
Coordinates
chrLK031961:+:965305..965763
Molecular Weight (calculated)
10932.8 Da
IEP (calculated)
4.530
GRAVY (calculated)
-0.647
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MGKGGNLVTA SEVEELRRKN GEMEKVVEQM KKEMLQLWRR TQVAEEAEER LCSQLAELEA ESLDEARDYH SRIIFLVNEL SRVSSSSSSS SSDLASP
1: MGKGGNYVTV AASEVDELRR KNGEMEKAVE EMKKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YHSRIIFLMN ELSRLSSDSA SASP
Arabidopsis Description
LSU2Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.