Factsheet for Bra020466.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001412.1-P
Bra002106.1-P
Bra004677.1-P
Bra005184.1-P
Bra005553.1-P
Bra006420.1-P
Bra010881.1-P
Bra017091.1-P
Bra024408.1-P
Bra028552.1-P
Bra030094.1-P
Bra031849.1-P
Bra032898.1-P
Bra034827.1-P
Bra036122.1-P
Bra036240.1-P
Bra038549.1-P
Bra038816.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24660.1	Bra010881.1-P	AT1G28360.1	21798944
AT5G24660.1	Bra030094.1-P	AT1G28360.1	21798944
AT5G24660.1	Bra032898.1-P	AT1G28360.1	21798944
AT5G24660.1	Bra036122.1-P	AT1G54770.1	21798944
AT5G24660.1	Bra038549.1-P	AT2G18730.1	21798944
AT5G24660.1	Bra038816.1-P	AT2G18730.1	21798944
AT5G24660.1	Bra005553.1-P	AT2G32840.1	21798944
AT5G24660.1	Bra005184.1-P	AT2G37560.1	21798944
AT5G24660.1	Bra017091.1-P	AT2G39100.1	21798944
AT5G24660.1	Bra004677.1-P	AT2G42260.1	21798944
AT5G24660.1	Bra001412.1-P	AT3G11590.1	21798944
AT5G24660.1	Bra034827.1-P	AT3G11590.1	21798944
AT5G24660.1	Bra036240.1-P	AT4G02770.1	21798944
AT5G24660.1	Bra028552.1-P	AT5G11090.1	21798944
AT5G24660.1	Bra002106.1-P	AT5G17790.1	21798944
AT5G24660.1	Bra006420.1-P	AT5G17790.1	21798944
AT5G24660.1	Bra024408.1-P	AT5G65683.1	21798944
AT5G24660.1	Bra031849.1-P	AT5G65683.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05452	Canola	cytosol, nucleus, plastid	97.94	97.94
CDY05402	Canola	nucleus	96.91	96.91
AT5G24660.1	Thale cress	cytosol, nucleus, plastid	81.44	84.04
Bra009783.1-P	Field mustard	cytosol, nucleus, plastid	80.41	83.87
AT5G24655.1	Thale cress	cytosol	77.32	81.52
Bra017975.1-P	Field mustard	cytosol	67.01	67.01
Bra017974.1-P	Field mustard	cytosol	58.76	66.28
KRH53667	Soybean	cytosol, extracellular, nucleus	49.48	40.0
Solyc03g096780.1.1	Tomato	nucleus	46.39	39.82
KRH64261	Soybean	nucleus	48.45	38.84
Solyc06g072990.1.1	Tomato	cytosol, plastid	45.36	38.6
PGSC0003DMT400001474	Potato	plastid	45.36	37.61
PGSC0003DMT400001476	Potato	plastid	43.3	37.5
Solyc03g096760.1.1	Tomato	plastid	43.3	37.5
PGSC0003DMT400069515	Potato	cytosol	43.3	37.17
PGSC0003DMT400001475	Potato	plastid	43.3	35.59
Solyc03g096770.1.1	Tomato	nucleus	40.21	33.91
KRH16959	Soybean	nucleus	40.21	33.33
VIT_16s0098g00600.t01	Wine grape	cytosol, nucleus, plastid	41.24	29.2

Protein Annotations

EnsemblPlants:Bra020466.1	EnsemblPlants:Bra020466.1-P	EnsemblPlantsGene:Bra020466	GO:GO:0006950	GO:GO:0008150	GO:GO:0009987
GO:GO:0033554	ncoils:Coil	PANTHER:PTHR34283	PANTHER:PTHR34283:SF1	SEG:seg	UniParc:UPI0002547056
UniProt:M4DVC2	MapMan:35.1	:	:	:	:

Description

AT5G24660 (E=7e-022) LSU2 | LSU2 (RESPONSE TO LOW SULFUR 2)

Coordinates

chrA02:+:25206387..25206680

Molecular Weight (calculated)

10995.9 Da

IEP (calculated)

4.387

GRAVY (calculated)

-0.751

Length

97 amino acids

Sequence
(BLAST)

1: MGKGGNLMTA SEVEELRRKN GEMEKEVEEM KKEMLQLWRR TQVAEEAEER LCSQLAELEA ESLDEARDYH SRIIFLVNEL SRVSSSSSSS SSDLASP

Best Arabidopsis Sequence Match ( AT5G24660.1 )
(BLAST)

1: MGKGGNYVTV AASEVDELRR KNGEMEKAVE EMKKEMLQLW RRTQVAEEAE ERLCSQLAEL EAESLDQARD YHSRIIFLMN ELSRLSSDSA SASP

Arabidopsis Description

LSU2Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.