Factsheet for Bra006420.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, vacuole

Predictor Summary:

plastid 4
cytosol 2
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 2
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid, vacuole
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra013378.1-P
Bra014290.1-P
Bra017974.1-P
Bra018081.1-P
Bra020970.1-P
Bra025315.1-P
Bra033769.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	Bra014290.1-P	AT1G51580.1	21798944
AT5G17790.1	Bra025315.1-P	AT3G27960.1	21798944
AT5G17790.1	Bra018081.1-P	AT3G48150.1	21798944
AT5G17790.1	Bra033769.1-P	AT3G48150.1	21798944
AT5G17790.1	Bra017974.1-P	AT3G49580.1	21798944
AT5G17790.1	Bra013378.1-P	AT4G19170.1	15340011
AT5G17790.1	Bra020970.1-P	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78760	Canola	plastid, vacuole	87.71	89.59
Bra002106.1-P	Field mustard	plastid	69.55	69.55
AT5G17790.1	Thale cress	plastid	59.22	55.94
KRH64967	Soybean	plastid	42.6	37.15
KRG94930	Soybean	mitochondrion, plastid, vacuole	43.16	37.09
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	45.11	36.75
PGSC0003DMT400028376	Potato	plastid	42.74	35.21
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	42.6	34.9
EES01648	Sorghum	plastid	41.76	33.26
Zm00001d012529_P001	Maize	plastid	40.64	32.23
Os01t0815700-01	Rice	plastid	41.06	30.95
Zm00001d043095_P004	Maize	mitochondrion	40.64	30.28
TraesCS3D01G332700.1	Wheat	plastid	41.06	26.63
TraesCS3B01G370800.2	Wheat	plastid	40.78	26.62
TraesCS3A01G339100.1	Wheat	nucleus	40.78	26.47
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	40.5	26.44
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	26.12	26.01
GSMUA_Achr7P21740_001	Banana	nucleus	39.25	25.0
Bra018736.1-P	Field mustard	plastid	13.27	22.78
Bra016196.1-P	Field mustard	mitochondrion, nucleus	12.43	19.18
Bra027952.1-P	Field mustard	nucleus	16.9	14.51

Protein Annotations

EnsemblPlants:Bra006420.1	EnsemblPlants:Bra006420.1-P	EnsemblPlantsGene:Bra006420	Gene3D:2.20.28.140	Gene3D:4.10.1060.10	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR001876	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	PANTHER:PTHR23111
PANTHER:PTHR23111:SF30	PFAM:PF00641	PFscan:PS50199	ScanProsite:PS01358	SEG:seg	SMART:SM00547
SUPFAM:SSF90209	UniParc:UPI000253FDE7	UniProt:M4CQD1	MapMan:16.12.5.3	:	:

Description

AT5G17790 (E=4e-251) VAR3 | VAR3 (VARIEGATED 3); binding / zinc ion binding

Coordinates

chrA03:-:3431014..3433611

Molecular Weight (calculated)

80625.3 Da

IEP (calculated)

8.349

GRAVY (calculated)

-0.754

Length

716 amino acids

Sequence
(BLAST)

001: MNSSTRLLSL LSPPPLFLLR ALRLSNLRRL HRLASPHPSV ISPNLRSLSL PVSPPPFIHT TPLGRFHTHR VRLSASDSAP SYHHQLPEWG ELLQSLSKAG
101: YFSDSALTSE SQKEFFPEFP DELIPPSLAC LALARDRPEL LAMVSRRDVE VVVENGKPFL FREGPDSLKR MSLYLTSGDI LDVDKASTVD LMRLLLSCVV
201: DFASSEGRKH HEGENVKSSV RNLLREIAKM SFRTPESNVH GTRQHQFSGG NGQGLGSFQK NNEMKRGDWI CSRCSGMNFA RNVKCFQCDE ARPKRQLTGS
301: EWECPQCDFY NYGRNIACLR CDCKRPGDVS LNSANSAKDP ELERRLVENE EKAQRWFSKV AQGGSDANSV DTDEDFPEIM PLRKGVNRYV VNTRKTPLER
401: RLSNAAETDG TKTNRNLNEI LGSTSSFASR SDDKNASSQI VNSGFVPFVP LPSDMFAKKP DKEESLTANN QMMAGVSEDK SSASLVGKET DEPERDEKES
501: EEKPARWLKR ITELHSVSDL QEETSPEKMP MRKGENQFVV SRKKDRSLTS PANKRRISVE TKDSDFVPFV PFPPDYFAKH KQPKETTTTT TDSIPVPVQE
601: ETGEPSRNNP EPMAGKMRNG KSLEGSLVKE PDLLDMSEEA KAERWFKRVA EIKNISELSQ IPDEDFPSIM PMRKGVNRFV ISKRKTPLER RLASQRQQIN
701: PPPITDHDPA RRGDTT

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.