Factsheet for Zm00001d012529_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
nucleus 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

plastid: 22065420
plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d006055_P002
Zm00001d017475_P002
Zm00001d017766_P001
Zm00001d017793_P001
Zm00001d051556_P001
Zm00001d051589_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	Zm00001d006055_P002	AT1G51580.1	21798944
AT5G17790.1	Zm00001d017793_P001	AT3G27960.1	21798944
AT5G17790.1	Zm00001d051589_P001	AT3G27960.1	21798944
AT5G17790.1	Zm00001d017475_P002	AT3G48150.1	21798944
AT5G17790.1	Zm00001d017766_P001	AT4G19170.1	15340011
AT5G17790.1	Zm00001d051556_P001	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES01648	Sorghum	plastid	76.19	76.53
Zm00001d043095_P004	Maize	mitochondrion	72.43	68.05
Os01t0815700-01	Rice	plastid	53.82	51.16
TraesCS3B01G370800.2	Wheat	plastid	56.37	46.4
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	54.26	44.67
TraesCS3A01G339100.1	Wheat	nucleus	53.27	43.61
TraesCS3D01G332700.1	Wheat	plastid	52.82	43.21
CDX70775	Canola	plastid	32.23	42.11
CDX78760	Canola	plastid, vacuole	32.12	41.37
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	39.65	40.73
Bra006420.1-P	Field mustard	plastid, vacuole	32.23	40.64
CDY38459	Canola	plastid	32.12	40.5
KRH64967	Soybean	plastid	36.66	40.32
Bra002106.1-P	Field mustard	plastid	31.89	40.22
CDY16887	Canola	plastid	31.45	39.61
KRG94930	Soybean	mitochondrion, plastid, vacuole	35.66	38.66
AT5G17790.1	Thale cress	plastid	31.01	36.94
PGSC0003DMT400028376	Potato	plastid	35.55	36.94
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	35.44	36.61
GSMUA_Achr7P21740_001	Banana	nucleus	41.31	33.19
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	24.92	31.29
Zm00001d013449_P001	Maize	mitochondrion	11.52	20.16
Zm00001d013432_P001	Maize	mitochondrion	10.08	17.27

Protein Annotations

EntrezGene:100273872	MapMan:16.12.5.3	Gene3D:4.10.1060.10	ProteinID:AQK99799.1	EMBL:BT067386	UniProt:C0PGG7
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR001876	PFAM:PF00641	ScanProsite:PS01358
PFscan:PS50199	PANTHER:PTHR23111	PANTHER:PTHR23111:SF30	SMART:SM00547	SUPFAM:SSF90209	UniParc:UPI000195CB47
EnsemblPlantsGene:Zm00001d012529	EnsemblPlants:Zm00001d012529_P001	EnsemblPlants:Zm00001d012529_T001	InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg

Description

Zinc finger protein VAR3 chloroplastic

Coordinates

chr8:-:176119291..176123198

Molecular Weight (calculated)

99496.9 Da

IEP (calculated)

5.953

GRAVY (calculated)

-0.731

Length

903 amino acids

Sequence
(BLAST)

001: MGGASKLLSS FLLTSSPLRL RPATAAAAAL FLSPPAAASR RLFLLSLPSP HRTLYISSAS ASLPHGSSSA CPPPPLRAPF PEWSRLVDRL AATGYGSGLP
101: FSADDLALVS GCVLSDGEQA AVSTCLAFAR DRPDLLSSLQ RKDVEVLVGN VAPSLFKDGE ASGQRLRRYL AGEETDVTVS ERAGTVDIVR YLLSYIYGSS
201: DICSEDKELT DLAVRNIMVE LVSFSALSQS STSVELTPNQ ICSSQHEQFS RPPGQNIEMK RGDWICTRCS FMNFARNVRC LECNEQRPKK MLTGGEWECP
301: QCDFYNYGRN MSCLKCDCKR PATIPPHPTS VGADLGGVVQ QLLKVTTSVG KSEIERKLAE NDEKAERWLS KVSQLHDSAD LSSLAEDEDF PEIMPMRKGV
401: NKFVVSTRKT PLERRLANAQ YSSNNILTLS DPKISQTLDR ILGSSAPTAA PNNQSVTSDA TMEAPKKSID HLSGIDPVPF EPLSADLFAK PESNDRQRNE
501: NEKNNVEDGS SMANNTVPLP ERRSMESLDT AEKWSEKVAE LDNVKDSPSA ISDENFPEIM PIRKGENRFV VSKKKDRSLT SQQYKRRSIL EQADSSDFVP
601: FVPFPPGYFG KKDTPIESTT HTGIMSGDGQ PKGNLNNENW NRNYYQYQSQ SQEFRPSGNA YTGSGNTGNS EGNINGSRGE STYHEANFEK RSYYNSGYSN
701: NGYWSSDNNN SNNAWSDNSN YNNNNAWSGN NSYNGCIRND NTSCNSNRDY NYNDTWSASS NSAWSSSNNN NQSGPFADNS NATRSSSSVN ANHSVHSSGY
801: GGNSNRGYTG KSLEGSAVKD PDPLDMSEEA KAERWFRRAA QIKDISELAN IPDEDFPEIM PMRKGVNRFV VSKRKTPLER RLTSPQYRRN LPIVSSETDK
901: DAN

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.