Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 1
- nucleus 1
- extracellular 1
- endoplasmic reticulum 2
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94930 | Soybean | mitochondrion, plastid, vacuole | 48.81 | 51.5 |
| KRH64967 | Soybean | plastid | 48.01 | 51.4 |
| Solyc01g057780.2.1 | Tomato | mitochondrion, plastid | 46.87 | 47.14 |
| PGSC0003DMT400028376 | Potato | plastid | 46.42 | 46.95 |
| CDY38459 | Canola | plastid | 37.77 | 46.37 |
| CDX78760 | Canola | plastid, vacuole | 36.86 | 46.22 |
| CDX70775 | Canola | plastid | 36.06 | 45.88 |
| Bra002106.1-P | Field mustard | plastid | 37.09 | 45.53 |
| Bra006420.1-P | Field mustard | plastid, vacuole | 36.75 | 45.11 |
| CDY16887 | Canola | plastid | 36.41 | 44.63 |
| AT5G17790.1 | Thale cress | plastid | 36.29 | 42.08 |
| Zm00001d012529_P001 | Maize | plastid | 40.73 | 39.65 |
| EES01648 | Sorghum | plastid | 40.27 | 39.38 |
| Os01t0815700-01 | Rice | plastid | 41.64 | 38.53 |
| Zm00001d043095_P004 | Maize | mitochondrion | 39.25 | 35.9 |
| GSMUA_Achr7P02560_001 | Banana | plastid, vacuole | 26.62 | 32.55 |
| TraesCS3A01G339100.1 | Wheat | nucleus | 40.61 | 32.37 |
| GSMUA_Achr7P21740_001 | Banana | nucleus | 41.3 | 32.3 |
| HORVU3Hr1G080150.3 | Barley | mitochondrion, nucleus, plastid | 40.27 | 32.27 |
| TraesCS3D01G332700.1 | Wheat | plastid | 40.27 | 32.07 |
| TraesCS3B01G370800.2 | Wheat | plastid | 39.82 | 31.91 |
| VIT_17s0000g02310.t01 | Wine grape | mitochondrion, plastid | 12.4 | 26.59 |
| VIT_01s0011g05660.t01 | Wine grape | nucleus | 11.04 | 21.95 |
| VIT_14s0128g00850.t01 | Wine grape | plastid | 13.42 | 14.37 |
Protein Annotations
| EntrezGene:100262132 | wikigene:100262132 | MapMan:16.12.5.3 | Gene3D:4.10.1060.10 | ProteinID:CCB55998 | ProteinID:CCB55998.1 |
| UniProt:F6HMX3 | EMBL:FN595995 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009570 | GO:GO:0009658 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0046872 |
| GO:GO:1900871 | InterPro:IPR001876 | EntrezGene:LOC100262132 | wikigene:LOC100262132 | PFAM:PF00641 | ScanProsite:PS01358 |
| PFscan:PS50199 | PANTHER:PTHR23111 | PANTHER:PTHR23111:SF30 | SMART:SM00547 | SUPFAM:SSF90209 | TIGR:TC68424 |
| UniParc:UPI0002108535 | ArrayExpress:VIT_08s0056g01170 | EnsemblPlantsGene:VIT_08s0056g01170 | EnsemblPlants:VIT_08s0056g01170.t01 | RefSeq:XP_002268494 | RefSeq:XP_002268494.2 |
| InterPro:Znf_RanBP2 | InterPro:Znf_RanBP2_sf | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr8:-:1784491..1796180
Molecular Weight (calculated)
97553.2 Da
IEP (calculated)
7.692
GRAVY (calculated)
-0.825
Length
879 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGATRFLML LATPFPILHP RPSLLHLARR SVLSLSPHLY LSATSRRRLR FSITASDHLH THAAAAASTR DDYLGDPFVS SPNSSRTWHP WPEWSRLVES
101: LNAGGDIARA PSDDDAFVES EGLPDEFVRA AIACLGFGRN NPNALGSLSR KAIEVVVENG SPFLFTNGFD SVRRLRAFLA GGESNVMESE KARTVDLMRF
201: LLSYASNPTN SSGRNDSYNR ELVESSVRNL LNELAEMSCR VPASDLSGSV QKHFSDRYGQ TPRPLGQNIE MKRGDWLCPR CSFMNFARNM KCLECEEARP
301: KRQLTGGEWE CPQCDFFNYG RNATCLRCDC KRPGEASFGS TNSRSGVGYG NGRFANKVDI DSRLADNEEK AERWFSKISQ LDSTTDMNSA IGDEDFPEIM
401: PLRKGVNRFV VSTRKTPLER RLANAQNRRN LGNDGTPEGD FQSGGSNKTL DTSVSKSLDE ILGRSSAVSG VDNNSTTTAE NAGSESRPPF SGSASSQYGR
501: PKGNNSSYAP FVPLPADMFA NKSQNPKEDS EKAVANSSGS FAPEATDQLG PISGTSESNK YGDNLKLSEK PVSQAESKVE DKEQAEKSER WFKKVAELHD
601: VTDLSSAISD EDFPEIMPMR KGENRFVVSK KKDRSLTSPT YKRRLAMDQA SKTNFVPFVP FPPDYFAKKD KQQPNEADST QKVTGETSPT SAIPEKLSER
701: LDDRIHDRDH MQPTENQTNS PGSWNFSSGE NSRDRPTPSY SNPQTNTKDS WNSGYSGKDN MTNLNESSPG LPKNQNVRQG WTGKSLEGSA VKEPDPLDMS
801: EEAKAERWFR RVAQIKDISE LSQIPDEDFP SIMPMRKGVN RFVVSKRKTP LERRLTSPQY RRNLPVVSSE PVKKENESG
101: LNAGGDIARA PSDDDAFVES EGLPDEFVRA AIACLGFGRN NPNALGSLSR KAIEVVVENG SPFLFTNGFD SVRRLRAFLA GGESNVMESE KARTVDLMRF
201: LLSYASNPTN SSGRNDSYNR ELVESSVRNL LNELAEMSCR VPASDLSGSV QKHFSDRYGQ TPRPLGQNIE MKRGDWLCPR CSFMNFARNM KCLECEEARP
301: KRQLTGGEWE CPQCDFFNYG RNATCLRCDC KRPGEASFGS TNSRSGVGYG NGRFANKVDI DSRLADNEEK AERWFSKISQ LDSTTDMNSA IGDEDFPEIM
401: PLRKGVNRFV VSTRKTPLER RLANAQNRRN LGNDGTPEGD FQSGGSNKTL DTSVSKSLDE ILGRSSAVSG VDNNSTTTAE NAGSESRPPF SGSASSQYGR
501: PKGNNSSYAP FVPLPADMFA NKSQNPKEDS EKAVANSSGS FAPEATDQLG PISGTSESNK YGDNLKLSEK PVSQAESKVE DKEQAEKSER WFKKVAELHD
601: VTDLSSAISD EDFPEIMPMR KGENRFVVSK KKDRSLTSPT YKRRLAMDQA SKTNFVPFVP FPPDYFAKKD KQQPNEADST QKVTGETSPT SAIPEKLSER
701: LDDRIHDRDH MQPTENQTNS PGSWNFSSGE NSRDRPTPSY SNPQTNTKDS WNSGYSGKDN MTNLNESSPG LPKNQNVRQG WTGKSLEGSA VKEPDPLDMS
801: EEAKAERWFR RVAQIKDISE LSQIPDEDFP SIMPMRKGVN RFVVSKRKTP LERRLTSPQY RRNLPVVSSE PVKKENESG
001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK
Arabidopsis Description
VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.