CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 4
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05647
EES07517
KXG30924
KXG35952

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G17790.1	KXG35952	AT1G51580.1	21798944
AT5G17790.1	EES05647	AT3G27960.1	21798944
AT5G17790.1	EES07517	AT3G48150.1	21798944
AT5G17790.1	KXG30924	AT4G19170.1	15340011

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043095_P004	Maize	mitochondrion	82.09	76.8
Zm00001d012529_P001	Maize	plastid	76.53	76.19
Os01t0815700-01	Rice	plastid	58.84	55.68
TraesCS3B01G370800.2	Wheat	plastid	59.07	48.4
TraesCS3A01G339100.1	Wheat	nucleus	58.95	48.05
TraesCS3D01G332700.1	Wheat	plastid	58.95	48.01
HORVU3Hr1G080150.3	Barley	mitochondrion, nucleus, plastid	56.95	46.67
CDX70775	Canola	plastid	32.81	42.69
CDX78760	Canola	plastid, vacuole	33.26	42.65
CDY38459	Canola	plastid	33.59	42.18
Bra006420.1-P	Field mustard	plastid, vacuole	33.26	41.76
Bra002106.1-P	Field mustard	plastid	32.93	41.34
KRH64967	Soybean	plastid	37.15	40.68
VIT_08s0056g01170.t01	Wine grape	endoplasmic reticulum, plastid	39.38	40.27
CDY16887	Canola	plastid	31.92	40.03
KRG94930	Soybean	mitochondrion, plastid, vacuole	36.71	39.62
AT5G17790.1	Thale cress	plastid	31.81	37.73
PGSC0003DMT400028376	Potato	plastid	36.37	37.63
Solyc01g057780.2.1	Tomato	mitochondrion, plastid	35.6	36.61
GSMUA_Achr7P02560_001	Banana	plastid, vacuole	25.36	31.71
GSMUA_Achr7P21740_001	Banana	nucleus	39.15	31.32
EER93589	Sorghum	mitochondrion, plastid	12.57	20.32
KXG37731	Sorghum	mitochondrion	9.9	16.92
EER98389	Sorghum	mitochondrion, plastid	13.9	15.66

Protein Annotations

MapMan:16.12.5.3	Gene3D:4.10.1060.10	EntrezGene:8085387	UniProt:C5XN72	EnsemblPlants:EES01648	ProteinID:EES01648
ProteinID:EES01648.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009570	GO:GO:0009658	GO:GO:0009987	GO:GO:0016043	GO:GO:0046872	GO:GO:1900871
InterPro:IPR001876	PFAM:PF00641	ScanProsite:PS01358	PFscan:PS50199	PANTHER:PTHR23111	PANTHER:PTHR23111:SF30
SMART:SM00547	EnsemblPlantsGene:SORBI_3003G334100	SUPFAM:SSF90209	unigene:Sbi.2170	UniParc:UPI0001A84584	RefSeq:XP_002456528.1
InterPro:Znf_RanBP2	InterPro:Znf_RanBP2_sf	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:65769023..65772906

Molecular Weight (calculated)

98237.0 Da

IEP (calculated)

6.139

GRAVY (calculated)

-0.770

Length

899 amino acids

Sequence
(BLAST)

001: MGCASKLLSS LLLTSSPLRL RPTTTAAAAA LFLSPPAAAS RRLLLLSSPS PPRTLSTSSA AAASSSLPHG SSSDSPAPPP RAPFPEWSRL VDRLAAAGYG
101: SGAPFPDDEL ALASGCGLPD GAQAAVSTCL AFALDRPGLL SSLPRKDVEV LVTNAAPSLF KDGEASAQRL RRYLAGEEIN VIVSERAETV DIVRYLLSYT
201: YGSSDSYPED KELTDSAVRN IMAELVSFSG PQSSTFAEST PNQSCLSQHE RFSRPPGQNI EMKRGDWICT RCSFMNFARN VRCLECNEQR PKKMLTGGEW
301: ECPQCDFYNY GRNMSCLKCD CKRPATIPLN PASVGAGLGG VAQLLNVTSV GKSEVERKLA ENDEKAERWL SKVSQLNDSA DLSSLAEDED FPEIMPMRKG
401: VNKFVVSTRK TPLERRLANA QYSSNNSPTL SDPKISQTLD RILGRSTPTA APNNQSVTSD TTTEAPKKSI DHLGGIDPVP FVPLSADLFA KPQSNNGQRN
501: ENEKFSAEDD SSMANNTVPL PERKSTESLD TTEKWSEKVA ELDNVKDSPS AISDENFPEI MPIRKGENRF VVSKKKDRSL TSQQYKRRSI LEQADSSDFV
601: PFVPFPPGYF AKKDTPIKST TDTGVMSEGS QPKGNLNNEN WNRNYYQHQS QSHGAQSRPS GTAYTGTQIT GNSQGNYNGG RGESTYHETN FEQQPYNSGY
701: SNSSYWSSDN KNSNNSWSEN SSYNNNNAWS GNNSYNSSTR NGNSSDNSSH GYNYNGTWND SSNSNNNQSG SFADNNSVSS SSSSMNANHT VHSSGYEGNS
801: NRGYTGKSLE GSAVKDPDPL DMSEEAKAER WFRRAAQIKD ISELANIPDE DFPEIMPMRK GVNRFVVSKR KTPLERRLTS PQYRRNLPIV SSEMDKDAS

Best Arabidopsis Sequence Match ( AT5G17790.1 )
(BLAST)

001: MNNSTRLISL FSPHPPPLFL LRGLYISRIA NLRRFHRRAF PPSSVASTNL CSFRPLVSLP PLIPTFPIGR FYNHQVRVSA ADFVPSYHNQ QLPEWTELLQ
101: SLSKAGYFSD SGSISGLESE FFPGFPDELL RPALACLALA RERPELLEML SRRDVEVLVE NGKPFLFKTG PDSLKRMSLY LRSGLQGIGK LMDMEKASTV
201: DLMRLILSYV VDVASSEESK QHNKEIMESS VRSLLSQIAK MSLRPPESNV HDTMQNQYSD RDGQGVRSFQ NNVEMKRGDW ICSRCSGMNF ARNVKCFQCD
301: EARPKRQLTG SEWECPQCDF YNYGRNVACL RCDCKRPRDS SLNSANSDYS SDPELERRLV ENEKKAQRWL SKVAQGGSDA NSVDTDEDFP EIMPLRKGVN
401: RYVVSTRKPP LERRLANTEN RVATDGNSKR SDDNALGSKT TRSLNEILGS SSSLTSRSDD KNVSSRRFES SQGINTDFVP FVPLPSDMFA KKPKEETQIG
501: LIDNIQVDGF SGGNQNVYQE DKSDANHSGK ETDRLEKEDH KSEEPARWFK RVTELHNVSD LESAIPQEIS PEKMPMRKGE NRFVVSRKKD RSLTSPAYKR
601: PEDSDFVPFV PFPPDYFAKE KQPKESIDTL PAPATENVSQ VVQQEPREPS INKSDTVAVK IRNGKSLEGS LVKESDLLDM SEEAKAERWF KRVAEIKNIS
701: ELSEIPDEDF PSIMPMRKGV NRFVVSKRKT PLERRLTSQR HQRNPHITNS DPTGKGDK

Arabidopsis Description

VAR3Zinc finger protein VAR3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8S9K3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.