CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88964
EER89648
EER92566
EER93246
EER95202
EER95307
EER96202
EER97037
EES02737
EES05908
EES07212
EES11468
EES12552
EES12747
EES15199
EES18281
EES19692
KXG20781
KXG23810
KXG25180
KXG25435
KXG26586
KXG28235
OQU85258
OQU87957
OQU90753

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G48150.1	EER93246	AT1G03130.1	21798944
AT3G48150.1	EES02737	AT1G06590.1	20706207
AT3G48150.1	EER95307	AT1G49850.1	21798944
AT3G48150.1	KXG23810	AT1G49850.1	21798944
AT3G48150.1	EER96202	AT1G72030.1	21798944
AT3G48150.1	EER95202	AT1G78770.1	20706207
AT3G48150.1	KXG20781	AT2G04660.1	14508008
AT3G48150.1	KXG28235	AT2G05830.1	20706207
AT3G48150.1	EER88964	AT2G17880.1	21798944
AT3G48150.1	EER92566	AT2G17880.1	21798944
AT3G48150.1	KXG25435	AT2G17880.1	21798944
AT3G48150.1	EES19692	AT2G40590.1	21798944
AT3G48150.1	OQU90753	AT2G40590.1	21798944
AT3G48150.1	EER97037	AT2G43370.1	21798944
AT3G48150.1	EER89648	AT3G13310.1	21798944
AT3G48150.1	EES11468	AT3G15160.1	21798944
AT3G48150.1	EES07212	AT3G15360.1	21798944
AT3G48150.1	EES12552	AT3G15360.1	21798944
AT3G48150.1	EES12747	AT3G17668.1	21798944
AT3G48150.1	EES15199	AT3G62790.1	21798944
AT3G48150.1	EES05908	AT4G21530.1	20706207
AT3G48150.1	KXG26586	AT4G24820.1	20706207
AT3G48150.1	OQU85258	AT4G24820.1	20706207
AT3G48150.1	EES18281	AT4G34740.1	21798944
AT3G48150.1	OQU87957	AT4G34740.1	21798944
AT3G48150.1	KXG25180	AT5G16560.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017475_P002	Maize	cytosol	95.0	95.16
TraesCS6D01G233200.1	Wheat	cytosol	89.33	89.48
TraesCS6B01G273900.1	Wheat	cytosol	88.83	88.98
TraesCS6A01G251400.1	Wheat	cytosol	88.67	88.81
Os02t0656300-01	Rice	cytosol	87.0	87.44
HORVU6Hr1G062870.1	Barley	cytosol, plastid	88.17	81.51
HORVU0Hr1G027080.4	Barley	plastid	79.33	79.33
GSMUA_Achr11P...	Banana	cytosol	72.5	72.02
VIT_07s0130g00490.t01	Wine grape	cytosol	68.5	71.23
VIT_07s0031g02330.t01	Wine grape	cytosol	67.5	70.19
Solyc03g113740.2.1	Tomato	cytosol, mitochondrion	65.67	68.4
PGSC0003DMT400063189	Potato	cytosol	61.67	68.01
KRH27971	Soybean	nucleus	65.33	67.94
KRH77487	Soybean	nucleus	65.0	67.47
Os06t0679100-00	Rice	plastid	19.83	66.85
Bra033769.1-P	Field mustard	nucleus	64.33	66.78
Bra018081.1-P	Field mustard	cytosol	64.17	66.49
AT3G48150.1	Thale cress	cytosol	63.83	66.15
KRH24006	Soybean	cytosol	63.0	64.18
CDY58070	Canola	cytosol	52.67	63.84
CDY44976	Canola	cytosol	53.17	63.17
CDY70805	Canola	nucleus	31.5	62.79
CDY36901	Canola	cytosol	52.0	62.28
CDY58069	Canola	nucleus	43.17	58.07
KRH29310	Soybean	cytosol	25.33	47.5
KXG33895	Sorghum	cytosol	19.83	15.78

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.3.4.1.1.2.4	EntrezGene:8073960	InterPro:APC8	UniProt:C5XRY8	ncoils:Coil
EnsemblPlants:EES07517	ProteinID:EES07517	ProteinID:EES07517.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005680	GO:GO:0006950
GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0030071	GO:GO:0031347
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	ProteinID:OQU85713.1	PFAM:PF04049	PFAM:PF13181
PFAM:PF13414	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF10	SMART:SM00028
EnsemblPlantsGene:SORBI_3004G295900	SUPFAM:SSF48452	unigene:Sbi.12563	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI0001A8606C	RefSeq:XP_002454541.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:63571663..63575325

Molecular Weight (calculated)

68125.3 Da

IEP (calculated)

6.871

GRAVY (calculated)

-0.372

Length

600 amino acids

Sequence
(BLAST)

001: MASAKETYRA ELRAAARQLG ERCLYSAAKW AAELLVGVEP DAAPVPSAVM DTPSSSSATS AGRLLHLHRS GGSSFRHRPR PAGGGTSSEA GTPLGGVSYV
101: STPIPDDDAF DSGGDKYLLA KTYFDCREYR RAAHVLQKQV GRKAVFLRCY ALYMAGEKRK EAEMIELEGS LGKSNAVNQE LIALEKELST HKRTGSIDSF
201: GLYLYGIVLR DKGCEGLART ILVESVNSYP WNWSAWSELQ SLCTSSDILN KLNLKNHWMK DFFLASAYLE LKMHEEALKR YERLMGVFRC SGYIQAQIAT
301: VQYSMRDLDE AEMIFEDLLR TDPFRVDSMD IYSNLLYAKE SLTALSFLAH RVFLTDKYRP ESCCIIANYY SLKGQHEKSV LYFQRALKLN RKYLSAWTLM
401: GHEYVELKNT PAAIDAYRRA VDINPRDFRA WYGLGQIYEM MGMPFYALHY FRKSSYLQPN DARLWIAMAQ CYESDPLQMI EEAIKCYERA ADSNDTEGIA
501: LHQLAKLHGM LGQSEEAAFY YKKDLERMEV EERQGQNVVE ALLFLAKYNK SIGKFEEAED YCTRLLDYTG PEKETAKNLL QGIKRLQSGF PSMNTDHFAL

Best Arabidopsis Sequence Match ( AT3G48150.1 )
(BLAST)

001: MVSKECCRNE IRAAIRQLSD RCLYSAAKWA GEQLVGIEQD PSNFTPANTR FQRGSSSIRR RFSTNESIST PLPSVGFSQA ATPLPEEDEA IDGDIYLLAK
101: SYFDCREYRR ASHMLRDQVS KKSLFLRYYA LYLAGEKRKE EEMIELEGPL GKSDAINREL VSLERDLSAL RRTGAIDSFG LYLYGVVLKE KGNESLARAS
201: LVESVNSYPW NWSAWSELQS LCTSIEILNS LNLNNHWMKE FFLGNAYQEL RMHTESLAKY EYLQGIFSFS NYIQAQTAKA QYSLREFDQV EIMFEELLRN
301: DPYRVEDMDL YSNVLYAKEA CAALSYLAHK VFLTDKYRPE SCCIIGNYYS LKGQHEKAVM YFRRALKLNK KYLSAWTLMG HEYVEMKNTP AAIDAYRRAV
401: DINPTDYRAW YGLGQAYEMM GMPFYALHYF RKSIFFLPND SRLWIAMAKC YQTEQLYMLE EAIKCYKRAV NCTDTEGIAL NQLAKLHQKL GRNEEAAYYF
501: EKDLERMDAE GLEGPNMFEA LVFLATHFKN HKKFEEAEVY CTRLLDYSGP EKEKAKSLLR GIRMAQTGFP SMDLEHFPI

Arabidopsis Description

APC8Anaphase-promoting complex subunit 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9STS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.