CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 2
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05709
KXG38894

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	EES05709	AT4G17680.1	21798944
AT2G17880.1	KXG38894	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d028404_P001	Maize	plastid	79.87	82.47
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	55.35	51.46
KRH69778	Soybean	mitochondrion	29.56	46.08
GSMUA_Achr1P02450_001	Banana	plastid	42.77	45.95
TraesCS4D01G226900.1	Wheat	plastid	46.54	43.79
TraesCS4B01G226300.1	Wheat	plastid	44.65	43.29
EER88964	Sorghum	plastid	35.85	41.61
TraesCS4A01G069100.1	Wheat	plastid	43.4	41.57
GSMUA_Achr5P18850_001	Banana	plastid	44.65	41.52
GSMUA_Achr5P11400_001	Banana	plastid	38.99	40.26
KXG25435	Sorghum	plastid	37.11	39.6
HORVU4Hr1G063590.1	Barley	plastid	42.77	39.31
TraesCS4B01G226200.1	Wheat	plastid	44.03	39.11
EER89648	Sorghum	plastid	25.16	38.84
KRH76655	Soybean	plastid	37.11	37.34
KRH28802	Soybean	plastid	37.11	37.34
GSMUA_Achr8P19450_001	Banana	plastid	40.88	36.93
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	34.59	36.42
KRG99625	Soybean	plastid	29.56	35.61
Solyc02g062160.1.1	Tomato	plastid	32.7	33.77
CDX69193	Canola	plastid	33.96	33.33
CDY30342	Canola	plastid	32.08	33.12
KRH38394	Soybean	plastid	28.93	33.09
AT4G36040.1	Thale cress	plastid	33.33	32.92
Bra010502.1-P	Field mustard	plastid	33.33	32.92
CDY34072	Canola	plastid	33.33	32.92
CDY24828	Canola	plastid	33.33	32.92
AT2G17880.1	Thale cress	plastid	32.7	32.5
Bra037247.1-P	Field mustard	plastid	31.45	32.47
CDY26834	Canola	plastid	32.08	32.28
PGSC0003DMT400061357	Potato	plastid	30.82	32.03
CDY29205	Canola	plastid	31.45	31.45
Bra011656.1-P	Field mustard	plastid	31.45	31.45
CDX75547	Canola	plastid	31.45	31.25
KRH08066	Soybean	plastid	30.82	31.21
CDX72573	Canola	plastid	31.45	31.06
Bra040872.1-P	Field mustard	plastid	30.82	30.82
KRH50148	Soybean	plastid	27.04	30.5
Bra017744.1-P	Field mustard	plastid	30.82	30.43
KRH20682	Soybean	plastid	25.79	29.71
CDY07811	Canola	plastid	29.56	29.01
KRH08065	Soybean	plastid	29.56	28.48
PGSC0003DMT400009189	Potato	plastid	25.16	27.97
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	32.7	25.87
KRH69779	Soybean	mitochondrion	27.67	21.57

Protein Annotations

Gene3D:1.10.287.110	MapMan:35.2	EntrezGene:8078856	UniProt:C5WQZ9	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
EnsemblPlants:EER92566	ProteinID:EER92566	ProteinID:EER92566.1	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf
PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076	PANTHER:PTHR44240	PANTHER:PTHR44240:SF4
SMART:SM00271	EnsemblPlantsGene:SORBI_3001G438700	SUPFAM:SSF46565	unigene:Sbi.17339	UniParc:UPI0001A82724	RefSeq:XP_002465568.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:71677940..71680353

Molecular Weight (calculated)

16817.8 Da

IEP (calculated)

11.466

GRAVY (calculated)

-0.253

Length

159 amino acids

Sequence
(BLAST)

001: MISPRPALSP SFLAFRPGSL SPAASPPPSP RLHHAPPPLS ASISSTVAAT AAPGHAAAAS SFYDVLGLRP GASAREIKAA YRRLALAVHP DAAAAASSAE
101: DFIRVHAAYS TLSDPDKRAD YDRRLLLSAA ARRRTAALGR SPSFPAHRSR RTWETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.