Factsheet for TraesCS4D01G226900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6B01G289500.1
TraesCS6D01G243000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6D01G243000.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G069100.1	Wheat	plastid	83.43	84.94
TraesCS4B01G226300.1	Wheat	plastid	62.13	64.02
HORVU4Hr1G063590.1	Barley	plastid	63.31	61.85
TraesCS4B01G226200.1	Wheat	plastid	55.03	51.96
Zm00001d028404_P001	Maize	plastid	46.15	50.65
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	47.34	46.78
EER92566	Sorghum	plastid	43.79	46.54
TraesCS7D01G517000.1	Wheat	plastid	38.46	46.43
KRH69778	Soybean	mitochondrion	27.81	46.08
GSMUA_Achr1P02450_001	Banana	plastid	39.65	45.27
TraesCS7D01G516900.1	Wheat	plastid	36.69	44.6
TraesCS7D01G516600.1	Wheat	plastid	35.5	43.17
TraesCS3D01G308300.1	Wheat	plastid	34.91	43.07
TraesCS7D01G516800.1	Wheat	plastid	35.5	42.86
TraesCS7D01G271900.1	Wheat	plastid	34.91	41.84
TraesCS7D01G516700.1	Wheat	plastid	34.32	41.43
KRH76655	Soybean	plastid	35.5	37.97
KRH28802	Soybean	plastid	35.5	37.97
AT4G36040.1	Thale cress	plastid	36.09	37.89
GSMUA_Achr5P18850_001	Banana	plastid	37.87	37.43
Bra011656.1-P	Field mustard	plastid	34.91	37.11
CDY29205	Canola	plastid	34.32	36.48
KRH08066	Soybean	plastid	33.73	36.31
CDX75547	Canola	plastid	34.32	36.25
CDY26834	Canola	plastid	33.73	36.08
Bra017744.1-P	Field mustard	plastid	34.32	36.02
CDX72573	Canola	plastid	34.32	36.02
KRH38394	Soybean	plastid	29.59	35.97
CDY07811	Canola	plastid	34.32	35.8
AT2G17880.1	Thale cress	plastid	33.73	35.62
GSMUA_Achr8P19450_001	Banana	plastid	36.69	35.23
Bra040872.1-P	Field mustard	plastid	33.14	35.22
CDX69193	Canola	plastid	33.73	35.19
GSMUA_Achr5P11400_001	Banana	plastid	31.95	35.06
KRG99625	Soybean	plastid	27.22	34.85
Bra010502.1-P	Field mustard	plastid	33.14	34.78
CDY24828	Canola	plastid	33.14	34.78
CDY34072	Canola	plastid	33.14	34.78
CDY30342	Canola	plastid	31.36	34.42
Bra037247.1-P	Field mustard	plastid	31.36	34.42
KRH20682	Soybean	plastid	27.22	33.33
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	29.59	33.11
TraesCS7D01G221800.1	Wheat	plastid	20.71	32.11
PGSC0003DMT400061357	Potato	plastid	28.4	31.37
Solyc02g062160.1.1	Tomato	plastid	27.22	29.87
KRH50148	Soybean	plastid	23.67	28.37
KRH08065	Soybean	plastid	26.63	27.27
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	31.95	26.87
PGSC0003DMT400009189	Potato	plastid	22.49	26.57
KRH69779	Soybean	mitochondrion	28.99	24.02

Protein Annotations

EnsemblPlants:TraesCS4D01G226900.1	EnsemblPlantsGene:TraesCS4D01G226900	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF4	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	TIGR:cd06257
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:386121856..386122507

Molecular Weight (calculated)

17964.1 Da

IEP (calculated)

10.598

GRAVY (calculated)

-0.321

Length

169 amino acids

Sequence
(BLAST)

001: MISPRPTLSS GFFSRSASFS RPGSFSPSPP ASPAAQAPPR LLSAPFARHA TFSRSASAVA APGRGASSCL YDVLGLDAGA SDGEIKAAYR RLARAVHPDV
101: SPHPAASADD FIRVHAAYST LSDPSKRADY DRRMIMIPSA VGRRSAPNLA RSPSFPGCCR RTWETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.