CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
extracellular 2
endoplasmic reticulum 2
vacuole 3
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04275
KRH28216
KRH57556
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	KRH04275	AT4G17680.1	21798944
AT2G17880.1	KRH28216	AT4G17680.1	21798944
AT2G17880.1	KRH57556	AT4G17680.1	21798944
AT2G17880.1	KRH77271	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38394	Soybean	plastid	64.49	64.03
KRH28802	Soybean	plastid	66.67	58.23
KRH76655	Soybean	plastid	62.32	54.43
KRG99625	Soybean	plastid	48.55	50.76
KRH69778	Soybean	mitochondrion	30.43	41.18
KRH29260	Soybean	cytosol	28.99	39.6
KRH24255	Soybean	cytosol	28.99	39.6
KRH50148	Soybean	plastid	39.13	38.3
Solyc02g062160.1.1	Tomato	plastid	39.86	35.71
KRH08066	Soybean	plastid	37.68	33.12
AT2G17880.1	Thale cress	plastid	36.96	31.88
Bra040872.1-P	Field mustard	plastid	36.23	31.45
CDY26834	Canola	plastid	35.51	31.01
KRH08065	Soybean	plastid	36.96	30.91
Bra037247.1-P	Field mustard	plastid	34.06	30.52
Bra017744.1-P	Field mustard	plastid	34.78	29.81
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	32.61	29.8
CDY29205	Canola	plastid	34.06	29.56
PGSC0003DMT400009189	Potato	plastid	30.43	29.37
GSMUA_Achr1P18570_001	Banana	mitochondrion	29.71	29.29
CDY30342	Canola	plastid	32.61	29.22
CDY24828	Canola	plastid	33.33	28.57
CDX72573	Canola	plastid	33.33	28.57
Bra010502.1-P	Field mustard	plastid	33.33	28.57
CDY07811	Canola	plastid	33.33	28.4
AT4G36040.1	Thale cress	plastid	32.61	27.95
TraesCS4A01G069100.1	Wheat	plastid	33.33	27.71
GSMUA_Achr1P02450_001	Banana	plastid	29.71	27.7
Bra011656.1-P	Field mustard	plastid	31.88	27.67
CDX75547	Canola	plastid	31.88	27.5
TraesCS7B01G445500.1	Wheat	plastid	27.54	27.34
Zm00001d028404_P001	Maize	plastid	30.43	27.27
TraesCS4D01G226900.1	Wheat	plastid	33.33	27.22
CDY34072	Canola	plastid	31.16	26.71
CDX69193	Canola	plastid	31.16	26.54
TraesCS7D01G516800.1	Wheat	plastid	26.81	26.43
GSMUA_Achr3P12640_001	Banana	plastid	25.36	26.32
GSMUA_Achr5P18850_001	Banana	plastid	32.61	26.32
Zm00001d014790_P001	Maize	plastid	24.64	26.15
GSMUA_Achr8P19450_001	Banana	plastid	33.33	26.14
TraesCS7B01G445600.1	Wheat	plastid	26.09	26.09
EER92566	Sorghum	plastid	29.71	25.79
TraesCS7A01G528800.1	Wheat	plastid	25.36	25.74
HORVU7Hr1G116890.2	Barley	plastid	26.09	25.71
TraesCS7A01G529200.1	Wheat	plastid	26.09	25.71
TraesCS4B01G226300.1	Wheat	plastid	30.43	25.61
KRH14184	Soybean	mitochondrion, plastid	26.09	25.35
GSMUA_Achr5P11400_001	Banana	plastid	28.26	25.32
TraesCS7D01G516600.1	Wheat	plastid	25.36	25.18
TraesCS7B01G445800.1	Wheat	plastid	25.36	25.0
TraesCS7A01G528700.1	Wheat	plastid	25.36	25.0
Zm00001d053213_P001	Maize	mitochondrion, plastid	25.36	25.0
TraesCS7D01G516700.1	Wheat	plastid	25.36	25.0
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	36.23	24.88
HORVU4Hr1G063590.1	Barley	plastid	31.16	24.86
TraesCS7B01G170400.1	Wheat	plastid	25.36	24.82
TraesCS7D01G271900.1	Wheat	plastid	25.36	24.82
TraesCS7B01G446000.1	Wheat	plastid	23.19	24.81
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	23.19	24.81
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	26.09	24.66
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	30.43	24.56
TraesCS7D01G517000.1	Wheat	plastid	24.64	24.29
HORVU7Hr1G116960.1	Barley	plastid	23.91	24.26
PGSC0003DMT400061357	Potato	plastid	26.81	24.18
TraesCS7A01G271600.1	Wheat	plastid	24.64	24.11
HORVU7Hr1G057330.1	Barley	plastid	24.64	24.11
Os06t0716100-01	Rice	plastid	23.19	24.06
TraesCS4B01G226200.1	Wheat	plastid	31.16	24.02
TraesCS7A01G528900.1	Wheat	plastid	23.91	23.74
TraesCS7A01G529000.1	Wheat	plastid	23.91	23.74
TraesCS7D01G516900.1	Wheat	plastid	23.91	23.74
TraesCS3D01G308300.1	Wheat	plastid	23.19	23.36
Os08t0548400-00	Rice	plastid	24.64	23.29
TraesCS7B01G448500.1	Wheat	plastid	21.74	23.26
Zm00001d032030_P001	Maize	plastid	23.19	23.19
TraesCS7B01G445700.1	Wheat	plastid	23.19	23.02
TraesCS7A01G529400.1	Wheat	plastid	21.01	22.31
KXG25435	Sorghum	plastid	23.91	22.15
EER88964	Sorghum	plastid	21.01	21.17
KRH69779	Soybean	mitochondrion	29.71	20.1
KRG98415	Soybean	plastid	21.01	19.21
KRH46491	Soybean	plastid	20.29	17.95
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	18.84	16.99

Protein Annotations

EMBL:ACUP02008292	EnsemblPlants:KRH20682	EnsemblPlantsGene:GLYMA_13G193900	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF3	PFAM:PF00226
PFscan:PS50076	PRINTS:PR00625	ProteinID:KRH20682	ProteinID:KRH20682.1	ScanProsite:PS00636	SEG:seg
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0006EDF230	UniProt:A0A0R0GQY1	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr13:-:30714547..30714981

Molecular Weight (calculated)

15303.3 Da

IEP (calculated)

8.950

GRAVY (calculated)

0.008

Length

138 amino acids

Sequence
(BLAST)

001: MISFMSFSAS FPAISFSGNA MAFSLCRIKF RLIVAFTTAI ATAEACSSWM EQPRPSYLNS SCSSIYDILG IPVGASNQEI KAVVCHLDVV AIDKKNSSAD
101: EFIKIHAAYS TLSDPDKRTN YDRSLFWRQQ SLKGRRQA

Best Arabidopsis Sequence Match ( AT4G36040.1 )
(BLAST)

001: MLSSSPTSFT HPFLSSSPPL SPISPPSRTA RISPPLVSAS CSYTYTEDSP RLHQIPRRLT TVPASLYDVL EVPLGATSQD IKSAYRRLAR ICHPDVAGTD
101: RTSSSSADEF MKIHAAYCTL SDPEKRSVYD RRMLRRSRPL TVGTSGLGSY VGRNWETDQC W

Arabidopsis Description

ATJ11At4g36040 [Source:UniProtKB/TrEMBL;Acc:Q1H544]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.