CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13310.1	KRH16959	AT3G49580.1	21798944
AT3G13310.1	KRH53667	AT3G49580.1	21798944
AT3G13310.1	KRH64261	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89648	Sorghum	plastid	37.32	51.46
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	34.51	49.49
TraesCS7A01G220300.1	Wheat	plastid	35.92	46.79
CDY44009	Canola	cytosol	17.61	46.3
TraesCS7D01G221800.1	Wheat	plastid	35.21	45.87
KRH29260	Soybean	cytosol	32.39	45.54
KRH69778	Soybean	mitochondrion	32.39	45.1
KRH24255	Soybean	cytosol	31.69	44.55
HORVU7Hr1G045280.1	Barley	plastid	33.8	43.24
VIT_19s0015g01370.t01	Wine grape	plastid	42.96	41.22
KRG98415	Soybean	plastid	42.96	40.4
GSMUA_Achr4P01700_001	Banana	plastid	36.62	40.31
PGSC0003DMT400056986	Potato	plastid	45.07	39.75
GSMUA_Achr9P19770_001	Banana	plastid	35.21	39.37
PGSC0003DMT400056985	Potato	plastid	45.07	39.02
Bra039384.1-P	Field mustard	plastid	42.96	38.85
CDY43357	Canola	plastid	42.96	38.36
CDX75702	Canola	plastid	42.96	37.89
Solyc07g065960.1.1	Tomato	plastid	42.96	37.89
AT3G13310.1	Thale cress	plastid	41.55	37.58
Bra001497.1-P	Field mustard	plastid	41.55	37.34
CDX82546	Canola	plastid	40.85	36.71
Solyc07g065970.1.1	Tomato	mitochondrion	42.25	36.59
CDY24196	Canola	plastid	40.85	36.48
Bra034691.1-P	Field mustard	plastid	40.14	35.85
CDY23588	Canola	plastid	40.14	35.4
KRH46491	Soybean	plastid	38.03	34.62
KRH76655	Soybean	plastid	36.62	32.91
KRH28802	Soybean	plastid	35.92	32.28
KRH38394	Soybean	plastid	30.28	30.94
KRH08065	Soybean	plastid	35.92	30.91
KRH08066	Soybean	plastid	33.8	30.57
KRG99625	Soybean	plastid	25.35	27.27
KRH50148	Soybean	plastid	26.06	26.24
KRH20682	Soybean	plastid	25.35	26.09
KRH69779	Soybean	mitochondrion	27.46	19.12

Protein Annotations

Gene3D:1.10.287.110	EntrezGene:100786034	MapMan:35.2	EMBL:ACUP02008494	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
EnsemblPlantsGene:GLYMA_14G010600	UniProt:I1M6D2	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	EnsemblPlants:KRH14184
ProteinID:KRH14184	ProteinID:KRH14184.1	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636	PFscan:PS50076
PANTHER:PTHR45432	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000233BB20	:	:

Description

hypothetical protein

Coordinates

chr14:+:817937..818830

Molecular Weight (calculated)

15955.7 Da

IEP (calculated)

8.976

GRAVY (calculated)

-0.468

Length

142 amino acids

Sequence
(BLAST)

001: MAGTLNLTPL TGAGRTLRPP FRISIRAFTA TAIDSRRAAS LYEVLRIKQN ASAVEIKSAY RNLAKVYHPD SALRRSESDE RDFIEIHDAY ETLSDPSARA
101: LYDLSLMAAR DDNRSFSSLV AAPNGSSGFY YQTRKWETDQ CW

Best Arabidopsis Sequence Match ( AT3G13310.1 )
(BLAST)

001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW

Arabidopsis Description

At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.