Factsheet for GSMUA_Achr4P01700_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G127100.1	Wheat	cytosol, mitochondrion	42.64	55.56
TraesCS7D01G221800.1	Wheat	plastid	43.41	51.38
TraesCS7A01G220300.1	Wheat	plastid	43.41	51.38
GSMUA_Achr9P19770_001	Banana	plastid	48.84	49.61
HORVU7Hr1G045280.1	Barley	plastid	42.64	49.55
EER89648	Sorghum	plastid	39.53	49.51
CDY44009	Canola	cytosol	17.83	42.59
KRG98415	Soybean	plastid	47.29	40.4
KRH14184	Soybean	mitochondrion, plastid	40.31	36.62
KRH46491	Soybean	plastid	44.19	36.54
GSMUA_Achr1P18570_001	Banana	mitochondrion	39.53	36.43
VIT_19s0015g01370.t01	Wine grape	plastid	40.31	35.14
PGSC0003DMT400056986	Potato	plastid	41.86	33.54
GSMUA_Achr1P02450_001	Banana	plastid	35.66	31.08
CDY23588	Canola	plastid	38.76	31.06
Bra001497.1-P	Field mustard	plastid	37.98	31.01
CDX82546	Canola	plastid	37.98	31.01
AT3G13310.1	Thale cress	plastid	37.21	30.57
GSMUA_Achr5P11400_001	Banana	plastid	36.43	30.52
PGSC0003DMT400056985	Potato	plastid	38.76	30.49
Solyc07g065970.1.1	Tomato	mitochondrion	38.76	30.49
CDX75702	Canola	plastid	37.98	30.43
CDY43357	Canola	plastid	37.21	30.19
Bra034691.1-P	Field mustard	plastid	37.21	30.19
Bra039384.1-P	Field mustard	plastid	36.43	29.94
Solyc07g065960.1.1	Tomato	plastid	37.21	29.81
GSMUA_Achr3P12640_001	Banana	plastid	30.23	29.32
GSMUA_Achr5P18850_001	Banana	plastid	38.76	29.24
CDY24196	Canola	plastid	34.11	27.67
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	29.46	26.03
GSMUA_Achr8P19450_001	Banana	plastid	29.46	21.59

Protein Annotations

EnsemblPlants:GSMUA_Achr4P01700_001	EnsemblPlants:GSMUA_Achr4T01700_001	EnsemblPlantsGene:GSMUA_Achr4G01700_001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR45432	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000296DC50	UniProt:M0SK87	MapMan:35.2

Description

Whole genome shotgun sequence of line PN40024, scaffold_15.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr4G01700_001]

Coordinates

chr4:+:1430364..1430927

Molecular Weight (calculated)

14134.8 Da

IEP (calculated)

11.025

GRAVY (calculated)

-0.304

Length

129 amino acids

Sequence
(BLAST)

001: MSGTVIFSGI SFSPARGISA QRRVVAQVAT AAGRSRAPAS LYQVLRVGET ATAREIKAAY RAMAKRFHPD AAPAGEGPDF LEIRSAYETL SDPAARARYD
101: RSIVGRIPRA GFVVSDRQRF TKWETDQCW

Best Arabidopsis Sequence Match ( AT3G13310.1 )
(BLAST)

001: MAGTLVNSAG RFSPGNCILP QQRTARFYSG TARFPTGAPS FKASAQTLNA EPAVTESVRR RVSSLYELLK VNETASLTEI KTAYRSLAKV YHPDASESDG
101: RDFMEIHKAY ATLADPTTRA IYDSTLRVPR RRVHAGAMGR SGRVYATTRR WETDQCW

Arabidopsis Description

At3g13310 [Source:UniProtKB/TrEMBL;Acc:Q9LTT7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.