Factsheet for GSMUA_Achr1P18570_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
cytosol 1
mitochondrion 4
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr8P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	44.29	60.78
GSMUA_Achr3P12640_001	Banana	plastid	43.57	45.86
GSMUA_Achr5P11400_001	Banana	plastid	50.0	45.45
KRH08066	Soybean	plastid	47.14	42.04
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	42.86	39.74
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	41.43	39.73
GSMUA_Achr4P01700_001	Banana	plastid	36.43	39.53
KRH28802	Soybean	plastid	44.29	39.24
GSMUA_Achr5P18850_001	Banana	plastid	47.86	39.18
GSMUA_Achr1P02450_001	Banana	plastid	40.0	37.84
KRH76655	Soybean	plastid	42.14	37.34
CDX72573	Canola	plastid	41.43	36.02
CDY30342	Canola	plastid	39.29	35.71
Bra017744.1-P	Field mustard	plastid	40.71	35.4
AT4G36040.1	Thale cress	plastid	40.0	34.78
GSMUA_Achr8P19450_001	Banana	plastid	43.57	34.66
CDY29205	Canola	plastid	39.29	34.59
AT2G17880.1	Thale cress	plastid	39.29	34.38
CDY26834	Canola	plastid	38.57	34.18
PGSC0003DMT400061357	Potato	plastid	37.14	33.99
Bra040872.1-P	Field mustard	plastid	38.57	33.96
CDY07811	Canola	plastid	39.29	33.95
CDX69193	Canola	plastid	39.29	33.95
GSMUA_Achr9P19770_001	Banana	plastid	30.71	33.86
CDX75547	Canola	plastid	38.57	33.75
CDY34072	Canola	plastid	38.57	33.54
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	47.86	33.33
Bra011656.1-P	Field mustard	plastid	37.86	33.33
KRH50148	Soybean	plastid	33.57	33.33
KRH08065	Soybean	plastid	39.29	33.33
Bra037247.1-P	Field mustard	plastid	36.43	33.12
KRH38394	Soybean	plastid	32.86	33.09
Bra010502.1-P	Field mustard	plastid	37.86	32.92
CDY24828	Canola	plastid	37.86	32.92
Solyc02g062160.1.1	Tomato	plastid	35.71	32.47
KRG99625	Soybean	plastid	30.0	31.82
PGSC0003DMT400009189	Potato	plastid	31.43	30.77
KRH20682	Soybean	plastid	29.29	29.71
KRH69779	Soybean	mitochondrion	38.57	26.47

Protein Annotations

EnsemblPlants:GSMUA_Achr1P18570_001	EnsemblPlants:GSMUA_Achr1T18570_001	EnsemblPlantsGene:GSMUA_Achr1G18570_001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF1	PFAM:PF00226
PFscan:PS50076	PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI0002959FD1	UniProt:M0S115	MapMan:35.1	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G18570_001]

Coordinates

chr1:-:13884759..13885366

Molecular Weight (calculated)

15324.2 Da

IEP (calculated)

9.617

GRAVY (calculated)

-0.239

Length

140 amino acids

Sequence
(BLAST)

001: MISSLCLASP KSFLRPPRCV AASAAAAPPA VCSSVTLYDV LGIAAGASGR EIKAAYRRLA LACHPDVAAV ERRGASAVEF MRVHAAYETL SDPEKRADYD
101: RSVMTAVDAG RRWAPFRSQW TSSYSTGRRR PRTWETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.