Factsheet for GSMUA_Achr1P02450_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, nucleus, plastid
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	plastid
Plant-mPloc:	golgi, nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr8P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	34.46	50.0
GSMUA_Achr3P12640_001	Banana	plastid	39.86	44.36
GSMUA_Achr5P18850_001	Banana	plastid	50.0	43.27
EER92566	Sorghum	plastid	45.95	42.77
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	41.22	41.78
Zm00001d028404_P001	Maize	plastid	43.24	41.56
GSMUA_Achr8P19450_001	Banana	plastid	48.65	40.91
GSMUA_Achr5P11400_001	Banana	plastid	42.57	40.91
GSMUA_Achr1P18570_001	Banana	mitochondrion	37.84	40.0
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	40.54	39.74
TraesCS4D01G226900.1	Wheat	plastid	45.27	39.65
TraesCS4B01G226300.1	Wheat	plastid	43.24	39.02
KRH76655	Soybean	plastid	41.22	38.61
KRH28802	Soybean	plastid	40.54	37.97
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	43.24	37.43
HORVU4Hr1G063590.1	Barley	plastid	43.24	36.99
TraesCS4A01G069100.1	Wheat	plastid	41.22	36.75
CDY30342	Canola	plastid	37.16	35.71
GSMUA_Achr4P01700_001	Banana	plastid	31.08	35.66
KRG99625	Soybean	plastid	31.08	34.85
CDY24828	Canola	plastid	37.84	34.78
Bra010502.1-P	Field mustard	plastid	37.84	34.78
KRH50148	Soybean	plastid	33.11	34.75
Bra037247.1-P	Field mustard	plastid	35.81	34.42
CDY34072	Canola	plastid	37.16	34.16
CDX72573	Canola	plastid	37.16	34.16
TraesCS4B01G226200.1	Wheat	plastid	41.22	34.08
CDX75547	Canola	plastid	36.49	33.75
Bra017744.1-P	Field mustard	plastid	36.49	33.54
KRH08066	Soybean	plastid	35.14	33.12
KRH38394	Soybean	plastid	31.08	33.09
AT4G36040.1	Thale cress	plastid	35.81	32.92
CDY29205	Canola	plastid	35.14	32.7
Bra040872.1-P	Field mustard	plastid	35.14	32.7
CDY26834	Canola	plastid	34.46	32.28
CDX69193	Canola	plastid	35.14	32.1
Bra011656.1-P	Field mustard	plastid	34.46	32.08
AT2G17880.1	Thale cress	plastid	34.46	31.88
GSMUA_Achr9P19770_001	Banana	plastid	27.03	31.5
PGSC0003DMT400061357	Potato	plastid	32.43	31.37
CDY07811	Canola	plastid	33.78	30.86
KRH20682	Soybean	plastid	27.7	29.71
PGSC0003DMT400009189	Potato	plastid	28.38	29.37
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	39.86	29.35
Solyc02g062160.1.1	Tomato	plastid	28.38	27.27
KRH08065	Soybean	plastid	29.73	26.67
KRH69779	Soybean	mitochondrion	31.08	22.55

Protein Annotations

EnsemblPlants:GSMUA_Achr1P02450_001	EnsemblPlants:GSMUA_Achr1T02450_001	EnsemblPlantsGene:GSMUA_Achr1G02450_001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000294E9BC	UniProt:M0RWF3	MapMan:35.2

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G02450_001]

Coordinates

chr1:-:2021035..2021641

Molecular Weight (calculated)

15717.3 Da

IEP (calculated)

9.234

GRAVY (calculated)

-0.261

Length

148 amino acids

Sequence
(BLAST)

001: MVSPHSLSSS QFLGLRVALP PRPNAGAAVS PQSLTVAAAL SSSAASSLYE VLGVPASASG QEIKAAYRRL ALECHPDVGA SADQFLRVHA AYSTLSDPDK
101: RADYDRRLVD SAASAAAAAL DRRRRSTYSR STSFSCGGRR TWETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.