Factsheet for Zm00001d028404_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017649_P001
Zm00001d029988_P001
Zm00001d047069_P001
Zm00001d051484_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	Zm00001d017649_P001	AT4G17680.1	21798944
AT2G17880.1	Zm00001d029988_P001	AT4G17680.1	21798944
AT2G17880.1	Zm00001d047069_P001	AT4G17680.1	21798944
AT2G17880.1	Zm00001d051484_P001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92566	Sorghum	plastid	82.47	79.87
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	55.84	50.29
TraesCS4B01G226300.1	Wheat	plastid	49.35	46.34
TraesCS4D01G226900.1	Wheat	plastid	50.65	46.15
TraesCS4A01G069100.1	Wheat	plastid	48.7	45.18
KRH69778	Soybean	mitochondrion	29.87	45.1
Zm00001d014790_P001	Maize	plastid	37.66	44.62
HORVU4Hr1G063590.1	Barley	plastid	49.35	43.93
GSMUA_Achr1P02450_001	Banana	plastid	41.56	43.24
GSMUA_Achr5P18850_001	Banana	plastid	43.51	39.18
GSMUA_Achr5P11400_001	Banana	plastid	38.96	38.96
TraesCS4B01G226200.1	Wheat	plastid	43.51	37.43
KRG99625	Soybean	plastid	31.82	37.12
Zm00001d032030_P001	Maize	plastid	33.12	36.96
GSMUA_Achr8P19450_001	Banana	plastid	42.21	36.93
KRH76655	Soybean	plastid	37.66	36.71
KRH28802	Soybean	plastid	37.66	36.71
Zm00001d053213_P001	Maize	mitochondrion, plastid	33.12	36.43
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	35.71	36.42
Solyc02g062160.1.1	Tomato	plastid	35.06	35.06
PGSC0003DMT400061357	Potato	plastid	33.77	33.99
KRH38394	Soybean	plastid	30.52	33.81
AT4G36040.1	Thale cress	plastid	35.06	33.54
CDX69193	Canola	plastid	35.06	33.33
KRH08066	Soybean	plastid	33.12	32.48
Bra011656.1-P	Field mustard	plastid	33.12	32.08
CDY29205	Canola	plastid	32.47	31.45
CDX75547	Canola	plastid	32.47	31.25
Bra017744.1-P	Field mustard	plastid	32.47	31.06
CDX72573	Canola	plastid	32.47	31.06
CDY30342	Canola	plastid	30.52	30.52
Bra037247.1-P	Field mustard	plastid	30.52	30.52
KRH50148	Soybean	plastid	27.92	30.5
KRH20682	Soybean	plastid	27.27	30.43
CDY24828	Canola	plastid	31.82	30.43
Bra010502.1-P	Field mustard	plastid	31.82	30.43
CDY34072	Canola	plastid	31.82	30.43
CDY26834	Canola	plastid	31.17	30.38
CDY07811	Canola	plastid	31.82	30.25
Bra040872.1-P	Field mustard	plastid	31.17	30.19
AT2G17880.1	Thale cress	plastid	31.17	30.0
KRH08065	Soybean	plastid	29.87	27.88
PGSC0003DMT400009189	Potato	plastid	25.32	27.27
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	34.42	26.37
KRH69779	Soybean	mitochondrion	28.57	21.57

Protein Annotations

EnsemblPlants:Zm00001d028404_P001	EnsemblPlants:Zm00001d028404_T001	EnsemblPlantsGene:Zm00001d028404	EntrezGene:103633511	Gene3D:1.10.287.110	InterPro:DnaJ_domain
InterPro:DnaJ_domain_CS	InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF4
PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625	ProteinID:ONL95909.1	ScanProsite:PS00636	SEG:seg
SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000221BE11	UniProt:A0A1D6JVT7	MapMan:35.1	:

Description

Chaperone protein dnaJ 11 chloroplastic

Coordinates

chr1:-:33738878..33739350

Molecular Weight (calculated)

16471.3 Da

IEP (calculated)

11.217

GRAVY (calculated)

-0.318

Length

154 amino acids

Sequence
(BLAST)

001: MISPRPALSP SFLAFRSGSP AASPPSSPRL HAPPPLSASF STVATAAPGH AAASSFYDVL GLRPGASARE IKAAYRRLAL AVHPDAAPHP TSSAEDFIRV
101: HAAYSTLSDP DKRADYDRRL LLSGATVRRT VALGRSPSFP AHRSRRTWET DQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.