Factsheet for PGSC0003DMT400061357

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2
endoplasmic reticulum 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400004642
PGSC0003DMT400052841
PGSC0003DMT400068387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	PGSC0003DMT400004642	AT4G17680.1	21798944
AT2G17880.1	PGSC0003DMT400052841	AT4G17680.1	21798944
AT2G17880.1	PGSC0003DMT400068387	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	35.95	53.92
Solyc02g062160.1.1	Tomato	plastid	52.94	52.6
PGSC0003DMT400009189	Potato	plastid	35.29	37.76
KRH28802	Soybean	plastid	38.56	37.34
GSMUA_Achr1P18570_001	Banana	mitochondrion	33.99	37.14
KRH50148	Soybean	plastid	33.99	36.88
KRH76655	Soybean	plastid	37.91	36.71
KRH08066	Soybean	plastid	37.25	36.31
Bra017744.1-P	Field mustard	plastid	37.91	36.02
AT2G17880.1	Thale cress	plastid	37.25	35.62
Zm00001d032030_P001	Maize	plastid	32.03	35.51
Bra011656.1-P	Field mustard	plastid	36.6	35.22
CDY30342	Canola	plastid	35.29	35.06
CDX72573	Canola	plastid	36.6	34.78
GSMUA_Achr3P12640_001	Banana	plastid	30.07	34.59
Bra037247.1-P	Field mustard	plastid	34.64	34.42
GSMUA_Achr5P11400_001	Banana	plastid	34.64	34.42
CDX75547	Canola	plastid	35.95	34.38
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	32.68	34.25
TraesCS7B01G448500.1	Wheat	plastid	28.76	34.11
GSMUA_Achr8P19450_001	Banana	plastid	39.22	34.09
TraesCS7B01G170400.1	Wheat	plastid	31.37	34.04
HORVU7Hr1G057330.1	Barley	plastid	31.37	34.04
PGSC0003DMT400025543	Potato	plastid	34.64	33.97
Bra040872.1-P	Field mustard	plastid	35.29	33.96
CDY29205	Canola	plastid	35.29	33.96
CDX69193	Canola	plastid	35.95	33.95
Zm00001d028404_P001	Maize	plastid	33.99	33.77
Zm00001d053213_P001	Maize	mitochondrion, plastid	30.72	33.57
CDY26834	Canola	plastid	34.64	33.54
TraesCS7D01G271900.1	Wheat	plastid	30.72	33.33
CDY07811	Canola	plastid	35.29	33.33
TraesCS7A01G271600.1	Wheat	plastid	30.72	33.33
Os06t0716100-01	Rice	plastid	28.76	33.08
Zm00001d014790_P001	Maize	plastid	28.1	33.08
AT4G36040.1	Thale cress	plastid	34.64	32.92
HORVU7Hr1G116890.2	Barley	plastid	30.07	32.86
KRG99625	Soybean	plastid	28.1	32.58
GSMUA_Achr1P02450_001	Banana	plastid	31.37	32.43
TraesCS7D01G516900.1	Wheat	plastid	29.41	32.37
HORVU7Hr1G116960.1	Barley	plastid	28.76	32.35
Bra010502.1-P	Field mustard	plastid	33.99	32.3
CDY24828	Canola	plastid	33.99	32.3
CDY34072	Canola	plastid	33.99	32.3
GSMUA_Achr5P18850_001	Banana	plastid	35.95	32.16
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	41.83	31.84
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	26.8	31.78
KRH38394	Soybean	plastid	28.76	31.65
TraesCS7D01G516600.1	Wheat	plastid	28.76	31.65
TraesCS7A01G529000.1	Wheat	plastid	28.76	31.65
TraesCS7A01G528900.1	Wheat	plastid	28.76	31.65
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	35.29	31.58
Os08t0548400-00	Rice	plastid	30.07	31.51
TraesCS7B01G445800.1	Wheat	plastid	28.76	31.43
TraesCS7A01G528700.1	Wheat	plastid	28.76	31.43
TraesCS7B01G446000.1	Wheat	plastid	26.14	31.01
TraesCS7B01G445700.1	Wheat	plastid	28.1	30.94
KRH08065	Soybean	plastid	33.33	30.91
KXG25435	Sorghum	plastid	30.07	30.87
EER92566	Sorghum	plastid	32.03	30.82
TraesCS4A01G069100.1	Wheat	plastid	33.33	30.72
TraesCS7D01G516700.1	Wheat	plastid	28.1	30.71
TraesCS7A01G529200.1	Wheat	plastid	28.1	30.71
TraesCS3D01G308300.1	Wheat	plastid	27.45	30.66
TraesCS7B01G445600.1	Wheat	plastid	27.45	30.43
TraesCS7B01G445500.1	Wheat	plastid	27.45	30.22
TraesCS7A01G528800.1	Wheat	plastid	26.8	30.15
HORVU4Hr1G063590.1	Barley	plastid	33.99	30.06
TraesCS7A01G529400.1	Wheat	plastid	25.49	30.0
TraesCS7D01G517000.1	Wheat	plastid	27.45	30.0
EER88964	Sorghum	plastid	26.8	29.93
TraesCS7D01G516800.1	Wheat	plastid	26.8	29.29
PGSC0003DMT400056986	Potato	plastid	30.72	29.19
TraesCS4B01G226300.1	Wheat	plastid	30.72	28.66
TraesCS4D01G226900.1	Wheat	plastid	31.37	28.4
PGSC0003DMT400056985	Potato	plastid	28.76	26.83
KRH20682	Soybean	plastid	24.18	26.81
KRH69779	Soybean	mitochondrion	35.29	26.47
TraesCS4B01G226200.1	Wheat	plastid	27.45	23.46
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	22.22	22.22

Protein Annotations

EnsemblPlants:PGSC0003DMT400061357	EnsemblPlantsGene:PGSC0003DMG400023876	EntrezGene:102582819	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623
InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF3	PFAM:PF00226	PFscan:PS50076
PGSC:PGSC0003DMG400023876	PRINTS:PR00625	RefSeq:XP_006361931.1	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI0002956446
UniProt:M1C7D7	MapMan:35.1	:	:	:	:

Description

DnaJ [Source:PGSC_GENE;Acc:PGSC0003DMG400023876]

Coordinates

chr2:-:20231060..20231777

Molecular Weight (calculated)

17077.9 Da

IEP (calculated)

8.294

GRAVY (calculated)

-0.373

Length

153 amino acids

Sequence
(BLAST)

001: MISSSFHQSP LPTPANTFTS GDNSMLSPSC VRFRQSGSFS VAATSYTSVA TCVPVSASPA SFYEILGISI GATIEEIKAA YRRLVRVYHP DVAAIDQKDS
101: YTDEFMKIRA AYCTLSDPNK RAEYDPSLYP RRRTGNLYSA AYTRRNWETD QCW

Best Arabidopsis Sequence Match ( AT4G36040.1 )
(BLAST)

001: MLSSSPTSFT HPFLSSSPPL SPISPPSRTA RISPPLVSAS CSYTYTEDSP RLHQIPRRLT TVPASLYDVL EVPLGATSQD IKSAYRRLAR ICHPDVAGTD
101: RTSSSSADEF MKIHAAYCTL SDPEKRSVYD RRMLRRSRPL TVGTSGLGSY VGRNWETDQC W

Arabidopsis Description

ATJ11At4g36040 [Source:UniProtKB/TrEMBL;Acc:Q1H544]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.