Factsheet for TraesCS7D01G516600.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G215300.1
TraesCS1B01G228800.1
TraesCS1D01G217800.1
TraesCS6A01G262200.1
TraesCS6B01G289500.1
TraesCS6D01G243000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	TraesCS1A01G215300.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1B01G228800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS1D01G217800.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6A01G262200.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6B01G289500.1	AT4G17680.1	21798944
AT2G17880.1	TraesCS6D01G243000.1	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G516700.1	Wheat	plastid	91.37	90.71
TraesCS7D01G516900.1	Wheat	plastid	89.21	89.21
TraesCS3D01G308300.1	Wheat	plastid	86.33	87.59
TraesCS7D01G516800.1	Wheat	plastid	87.05	86.43
HORVU7Hr1G116890.2	Barley	plastid	86.33	85.71
HORVU7Hr1G116960.1	Barley	plastid	82.01	83.82
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	76.98	82.95
TraesCS7D01G517000.1	Wheat	plastid	81.3	80.71
TraesCS7B01G446000.1	Wheat	plastid	74.1	79.84
TraesCS7B01G448500.1	Wheat	plastid	63.31	68.22
Os06t0716100-01	Rice	plastid	60.43	63.16
Zm00001d014790_P001	Maize	plastid	57.55	61.54
EER88964	Sorghum	plastid	57.55	58.39
TraesCS7D01G271900.1	Wheat	plastid	46.76	46.1
KRH69778	Soybean	mitochondrion	32.37	44.12
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	41.01	39.04
TraesCS4D01G226900.1	Wheat	plastid	43.17	35.5
TraesCS7D01G221800.1	Wheat	plastid	27.34	34.86
KRH76655	Soybean	plastid	38.13	33.54
KRH28802	Soybean	plastid	37.41	32.91
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	35.25	32.45
Solyc02g062160.1.1	Tomato	plastid	34.53	31.17
KRH08066	Soybean	plastid	34.53	30.57
KRH38394	Soybean	plastid	29.5	29.5
CDX69193	Canola	plastid	33.81	29.01
Bra011656.1-P	Field mustard	plastid	33.09	28.93
PGSC0003DMT400061357	Potato	plastid	31.65	28.76
CDX75547	Canola	plastid	32.37	28.12
AT4G36040.1	Thale cress	plastid	32.37	27.95
Bra010502.1-P	Field mustard	plastid	32.37	27.95
CDY34072	Canola	plastid	32.37	27.95
CDY24828	Canola	plastid	32.37	27.95
Bra017744.1-P	Field mustard	plastid	31.65	27.33
CDX72573	Canola	plastid	31.65	27.33
CDY26834	Canola	plastid	30.94	27.22
AT2G17880.1	Thale cress	plastid	30.94	26.88
KRH08065	Soybean	plastid	31.65	26.67
CDY30342	Canola	plastid	29.5	26.62
Bra037247.1-P	Field mustard	plastid	29.5	26.62
KRG99625	Soybean	plastid	25.18	26.52
Bra040872.1-P	Field mustard	plastid	30.22	26.42
CDY07811	Canola	plastid	30.22	25.93
CDY29205	Canola	plastid	29.5	25.79
KRH20682	Soybean	plastid	25.18	25.36
PGSC0003DMT400009189	Potato	plastid	25.18	24.48
KRH50148	Soybean	plastid	23.74	23.4
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	30.22	20.9
KRH69779	Soybean	mitochondrion	25.9	17.65

Protein Annotations

EnsemblPlants:TraesCS7D01G516600.1	EnsemblPlantsGene:TraesCS7D01G516600	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:IPR001623	InterPro:IPR036869
InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF3	PFAM:PF00226	PFscan:PS50076	PRINTS:PR00625
SEG:seg	SMART:SM00271	SUPFAM:SSF46565	TIGR:cd06257	MapMan:35.2	:

Description

No Description!

Coordinates

chr7D:+:616055588..616056259

Molecular Weight (calculated)

14698.5 Da

IEP (calculated)

10.727

GRAVY (calculated)

-0.281

Length

139 amino acids

Sequence
(BLAST)

001: MATFATSTPA VMGSARTGRV AGPRRCVVAR ASATMAAPAA VAAGRTHYEV LGVGAGASRG EIKAAYRRLA REVHPDAAGG GGDEGFIRLH AAYTTLADPD
101: ERARYDRDVA CRTAGMMMRR AAAAGPAFRR RTWETDQCW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.