CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH04275
KRH28216
KRH57556
KRH77271

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	KRH04275	AT4G17680.1	21798944
AT2G17880.1	KRH28216	AT4G17680.1	21798944
AT2G17880.1	KRH57556	AT4G17680.1	21798944
AT2G17880.1	KRH77271	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH29260	Soybean	cytosol	54.9	55.45
KRH24255	Soybean	cytosol	53.92	54.46
KRH08066	Soybean	plastid	79.41	51.59
GSMUA_Achr1P18570_001	Banana	mitochondrion	60.78	44.29
KRH28802	Soybean	plastid	66.67	43.04
KRH08065	Soybean	plastid	68.63	42.42
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	60.78	41.06
KRH76655	Soybean	plastid	62.75	40.51
CDX72573	Canola	plastid	63.73	40.37
Zm00001d053213_P001	Maize	mitochondrion, plastid	54.9	40.0
CDX75547	Canola	plastid	61.76	39.38
Bra017744.1-P	Field mustard	plastid	61.76	39.13
CDY24828	Canola	plastid	61.76	39.13
Bra010502.1-P	Field mustard	plastid	61.76	39.13
AT2G17880.1	Thale cress	plastid	60.78	38.75
CDY34072	Canola	plastid	60.78	38.51
Bra011656.1-P	Field mustard	plastid	59.8	38.36
GSMUA_Achr3P12640_001	Banana	plastid	50.0	38.35
CDY30342	Canola	plastid	57.84	38.31
AT4G36040.1	Thale cress	plastid	59.8	37.89
CDX69193	Canola	plastid	59.8	37.65
Bra037247.1-P	Field mustard	plastid	55.88	37.01
Solyc02g062160.1.1	Tomato	plastid	54.9	36.36
Zm00001d032030_P001	Maize	plastid	49.02	36.23
CDY26834	Canola	plastid	55.88	36.08
KRH38394	Soybean	plastid	49.02	35.97
PGSC0003DMT400061357	Potato	plastid	53.92	35.95
CDY29205	Canola	plastid	55.88	35.85
KXG25435	Sorghum	plastid	51.96	35.57
Bra040872.1-P	Field mustard	plastid	54.9	35.22
GSMUA_Achr5P11400_001	Banana	plastid	52.94	35.06
KRG99625	Soybean	plastid	45.1	34.85
Zm00001d014790_P001	Maize	plastid	44.12	34.62
GSMUA_Achr1P02450_001	Banana	plastid	50.0	34.46
TraesCS7B01G170400.1	Wheat	plastid	47.06	34.04
TraesCS7A01G271600.1	Wheat	plastid	47.06	34.04
HORVU7Hr1G057330.1	Barley	plastid	47.06	34.04
CDY07811	Canola	plastid	53.92	33.95
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	66.67	33.83
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	48.04	33.56
TraesCS7B01G445600.1	Wheat	plastid	45.1	33.33
TraesCS7B01G446000.1	Wheat	plastid	42.16	33.33
TraesCS7B01G446100.1	Wheat	mitochondrion, plastid	42.16	33.33
TraesCS7D01G271900.1	Wheat	plastid	46.08	33.33
Os08t0548400-00	Rice	plastid	47.06	32.88
HORVU7Hr1G116890.2	Barley	plastid	45.1	32.86
TraesCS7B01G445800.1	Wheat	plastid	45.1	32.86
TraesCS7A01G529200.1	Wheat	plastid	45.1	32.86
KRH50148	Soybean	plastid	45.1	32.62
TraesCS7B01G448500.1	Wheat	plastid	41.18	32.56
KRH14184	Soybean	mitochondrion, plastid	45.1	32.39
TraesCS7D01G516600.1	Wheat	plastid	44.12	32.37
HORVU7Hr1G116960.1	Barley	plastid	43.14	32.35
Os06t0716100-01	Rice	plastid	42.16	32.33
TraesCS7D01G516700.1	Wheat	plastid	44.12	32.14
TraesCS7A01G528700.1	Wheat	plastid	44.12	32.14
TraesCS7D01G516900.1	Wheat	plastid	43.14	31.65
TraesCS7A01G529000.1	Wheat	plastid	43.14	31.65
TraesCS7A01G529400.1	Wheat	plastid	40.2	31.54
TraesCS7D01G517000.1	Wheat	plastid	43.14	31.43
EER88964	Sorghum	plastid	42.16	31.39
KRH69779	Soybean	mitochondrion	62.75	31.37
TraesCS7B01G445500.1	Wheat	plastid	42.16	30.94
TraesCS7A01G528900.1	Wheat	plastid	42.16	30.94
TraesCS7B01G445700.1	Wheat	plastid	42.16	30.94
TraesCS7D01G516800.1	Wheat	plastid	42.16	30.71
GSMUA_Achr8P19450_001	Banana	plastid	52.94	30.68
KRH20682	Soybean	plastid	41.18	30.43
GSMUA_Achr5P18850_001	Banana	plastid	50.98	30.41
TraesCS7A01G528800.1	Wheat	plastid	40.2	30.15
TraesCS3D01G308300.1	Wheat	plastid	40.2	29.93
Zm00001d028404_P001	Maize	plastid	45.1	29.87
EER92566	Sorghum	plastid	46.08	29.56
KRG98415	Soybean	plastid	42.16	28.48
TraesCS4B01G226300.1	Wheat	plastid	45.1	28.05
PGSC0003DMT400009189	Potato	plastid	39.22	27.97
TraesCS4D01G226900.1	Wheat	plastid	46.08	27.81
Os03t0244950-00	Rice	mitochondrion, nucleus, plastid	45.1	26.9
HORVU4Hr1G063590.1	Barley	plastid	45.1	26.59
TraesCS4A01G069100.1	Wheat	plastid	43.14	26.51
KRH46491	Soybean	plastid	38.24	25.0
TraesCS7B01G445900.1	Wheat	mitochondrion, plastid	37.25	24.84
TraesCS4B01G226200.1	Wheat	plastid	39.22	22.35

Protein Annotations

EMBL:ACUP02000729	EnsemblPlants:KRH69778	EnsemblPlantsGene:GLYMA_02G047900	EntrezGene:100779511	Gene3D:1.10.287.110	InterPro:DnaJ_domain
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PANTHER:PTHR44240:SF1	PFAM:PF00226
PFscan:PS50076	PRINTS:PR00625	ProteinID:KRH69778	ProteinID:KRH69778.1	SMART:SM00271	SUPFAM:SSF46565
UniParc:UPI0001FBDBF7	UniProt:K7K6H2	MapMan:35.1	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:4402299..4403204

Molecular Weight (calculated)

11648.8 Da

IEP (calculated)

9.776

GRAVY (calculated)

-0.608

Length

102 amino acids

Sequence
(BLAST)

001: MASSATLYQI LGVRAVASGE EIKAAYRRLA RVCHPDVVPL ERRDSSAAEF MKIHAAYRTL SDPEKRASYD RSLFRRRQRT LTMSPSGYCG YGGRNWETDQ
101: CW

Best Arabidopsis Sequence Match ( AT2G17880.1 )
(BLAST)

001: MLSSSPTFFA TPFLSSSSSS SPSFSSTSPP SRISRISPSL STTTASYTCA EDLPRLRQIP QRFSATASLY EILEIPVGST SQEIKSAYRR LARICHPDVA
101: RNSRDNSSAD DFMKIHAAYC TLSDPEKRAV YDRRTLLRSR PLTAGYGSYG GRNWETDQCW

Arabidopsis Description

At2g17880 [Source:UniProtKB/TrEMBL;Acc:O48828]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.