Factsheet for GSMUA_Achr3P12640_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
mitochondrion 2
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P00560_001
GSMUA_Achr2P12040_001
GSMUA_Achr2P18250_001
GSMUA_Achr4P21690_001
GSMUA_Achr4P30100_001
GSMUA_Achr8P14860_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G17880.1	GSMUA_Achr1P00560_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P12040_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr2P18250_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P21690_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr4P30100_001	AT4G17680.1	21798944
AT2G17880.1	GSMUA_Achr8P14860_001	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69778	Soybean	mitochondrion	38.35	50.0
GSMUA_AchrUn_...	Banana	mitochondrion, plastid	48.12	43.84
GSMUA_Achr1P18570_001	Banana	mitochondrion	45.86	43.57
GSMUA_Achr1P02450_001	Banana	plastid	44.36	39.86
GSMUA_Achr5P11400_001	Banana	plastid	43.61	37.66
CDX72573	Canola	plastid	42.11	34.78
CDX69193	Canola	plastid	42.11	34.57
VIT_03s0038g02110.t01	Wine grape	cytosol, nucleus, plastid	39.1	34.44
CDX75547	Canola	plastid	41.35	34.38
AT4G36040.1	Thale cress	plastid	41.35	34.16
GSMUA_Achr8P19450_001	Banana	plastid	45.11	34.09
Bra011656.1-P	Field mustard	plastid	40.6	33.96
GSMUA_Achr5P18850_001	Banana	plastid	43.61	33.92
AT2G17880.1	Thale cress	plastid	40.6	33.75
CDY24828	Canola	plastid	40.6	33.54
CDY34072	Canola	plastid	40.6	33.54
Bra017744.1-P	Field mustard	plastid	40.6	33.54
Bra010502.1-P	Field mustard	plastid	40.6	33.54
CDY30342	Canola	plastid	38.35	33.12
Bra037247.1-P	Field mustard	plastid	38.35	33.12
KRH08066	Soybean	plastid	36.84	31.21
Solyc02g062160.1.1	Tomato	plastid	36.09	31.17
CDY26834	Canola	plastid	36.84	31.01
KRH28802	Soybean	plastid	36.84	31.01
KRH76655	Soybean	plastid	36.09	30.38
KRG99625	Soybean	plastid	30.08	30.3
GSMUA_Achr4P01700_001	Banana	plastid	29.32	30.23
CDY29205	Canola	plastid	36.09	30.19
PGSC0003DMT400061357	Potato	plastid	34.59	30.07
CDY07811	Canola	plastid	36.09	29.63
Bra040872.1-P	Field mustard	plastid	35.34	29.56
KRH38394	Soybean	plastid	30.83	29.5
GSMUA_Achr9P19770_001	Banana	plastid	27.82	29.13
PGSC0003DMT400009189	Potato	plastid	30.08	27.97
VIT_04s0023g03470.t01	Wine grape	cytosol, plastid	41.35	27.36
KRH50148	Soybean	plastid	27.82	26.24
KRH08065	Soybean	plastid	32.33	26.06
KRH20682	Soybean	plastid	26.32	25.36
KRH69779	Soybean	mitochondrion	31.58	20.59

Protein Annotations

EnsemblPlants:GSMUA_Achr3P12640_001	EnsemblPlants:GSMUA_Achr3T12640_001	EnsemblPlantsGene:GSMUA_Achr3G12640_001	Gene3D:1.10.287.110	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
InterPro:IPR001623	InterPro:IPR036869	InterPro:J_dom_sf	PANTHER:PTHR44240	PFAM:PF00226	PFscan:PS50076
PRINTS:PR00625	ScanProsite:PS00636	SEG:seg	SMART:SM00271	SUPFAM:SSF46565	UniParc:UPI000296A7EA
UniProt:M0SE31	MapMan:35.1	:	:	:	:

Description

Chaperone protein dnaJ 11, chloroplast, putative [Source:GMGC_GENE;Acc:GSMUA_Achr3G12640_001]

Coordinates

chr3:+:9364978..9365379

Molecular Weight (calculated)

14669.4 Da

IEP (calculated)

9.654

GRAVY (calculated)

-0.314

Length

133 amino acids

Sequence
(BLAST)

001: MSSLSLACPK SFLRSPSLPR RRPPSCSVAV GSSSATLYDV LGVAADATGV EIKVAYRRLA RSCHPDVVAA QGKGASAADE FMRVRAAYEI LSDPEKRVDY
101: DRRVKAVVFS ALRTSWCSSQ DRRPRTWETD QCW

Best Arabidopsis Sequence Match ( AT4G36040.1 )
(BLAST)

001: MLSSSPTSFT HPFLSSSPPL SPISPPSRTA RISPPLVSAS CSYTYTEDSP RLHQIPRRLT TVPASLYDVL EVPLGATSQD IKSAYRRLAR ICHPDVAGTD
101: RTSSSSADEF MKIHAAYCTL SDPEKRSVYD RRMLRRSRPL TVGTSGLGSY VGRNWETDQC W

Arabidopsis Description

ATJ11At4g36040 [Source:UniProtKB/TrEMBL;Acc:Q1H544]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.