Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P00560_001 | Banana | nucleus | 54.75 | 57.79 |
| GSMUA_Achr2P12040_001 | Banana | plastid | 48.85 | 55.39 |
| GSMUA_Achr8P14860_001 | Banana | nucleus | 57.38 | 51.93 |
| GSMUA_Achr4P21690_001 | Banana | nucleus | 55.08 | 51.85 |
| GSMUA_Achr2P18250_001 | Banana | nucleus | 55.74 | 51.52 |
| Bra024967.1-P | Field mustard | plastid | 34.1 | 42.11 |
| HORVU1Hr1G054930.3 | Barley | cytosol | 44.59 | 41.46 |
| TraesCS1A01G215300.1 | Wheat | cytosol | 43.93 | 41.36 |
| TraesCS1D01G217800.1 | Wheat | cytosol | 43.28 | 41.12 |
| TraesCS1B01G228800.1 | Wheat | cytosol | 43.93 | 41.1 |
| Os02t0687500-01 | Rice | cytosol, nucleus, plastid | 42.62 | 40.88 |
| KRH77271 | Soybean | plastid | 41.97 | 39.75 |
| Zm00001d017649_P001 | Maize | plastid | 42.62 | 39.27 |
| Os10t0565500-01 | Rice | nucleus | 44.92 | 39.03 |
| VIT_02s0012g00290.t01 | Wine grape | cytosol, nucleus, plastid | 42.95 | 38.87 |
| Zm00001d047069_P001 | Maize | cytosol | 42.3 | 38.86 |
| KXG38894 | Sorghum | cytosol, mitochondrion, nucleus | 43.93 | 38.51 |
| KRH28216 | Soybean | nucleus | 41.31 | 38.3 |
| CDX77733 | Canola | nucleus | 37.05 | 37.67 |
| CDY33511 | Canola | nucleus | 37.38 | 37.62 |
| TraesCS6D01G243000.1 | Wheat | cytosol | 40.98 | 37.43 |
| KRH04275 | Soybean | nucleus | 43.61 | 37.25 |
| Zm00001d029988_P001 | Maize | cytosol, mitochondrion, nucleus | 40.98 | 37.2 |
| TraesCS6B01G289500.1 | Wheat | nucleus | 40.98 | 36.98 |
| KRH57556 | Soybean | nucleus | 41.97 | 36.57 |
| Solyc06g061020.2.1 | Tomato | nucleus | 39.67 | 36.56 |
| EES05709 | Sorghum | nucleus | 42.3 | 36.54 |
| CDY09609 | Canola | cytosol | 29.51 | 36.44 |
| TraesCS6A01G262200.1 | Wheat | nucleus | 40.33 | 36.18 |
| HORVU6Hr1G066640.4 | Barley | nucleus | 40.66 | 36.15 |
| Solyc08g007120.2.1 | Tomato | nucleus | 39.02 | 35.95 |
| Solyc08g077460.2.1 | Tomato | nucleus | 40.98 | 35.92 |
| CDY37172 | Canola | cytosol | 35.08 | 35.43 |
| Zm00001d051484_P001 | Maize | nucleus, plastid | 40.98 | 35.41 |
| PGSC0003DMT400068387 | Potato | nucleus | 39.67 | 35.38 |
| AT5G47050.1 | Thale cress | nucleus | 34.75 | 35.33 |
| PGSC0003DMT400004642 | Potato | nucleus | 39.67 | 34.97 |
| CDY43447 | Canola | nucleus | 34.43 | 34.77 |
| Bra017511.1-P | Field mustard | nucleus | 34.43 | 34.77 |
| CDY51856 | Canola | cytosol | 34.43 | 34.65 |
| CDY03162 | Canola | cytosol | 34.43 | 32.61 |
| CDX90458 | Canola | cytosol | 32.46 | 32.57 |
| PGSC0003DMT400052841 | Potato | nucleus | 36.39 | 31.81 |
| AT1G32740.1 | Thale cress | nucleus | 31.48 | 30.77 |
| AT4G17680.1 | Thale cress | nucleus | 31.48 | 30.57 |
| Bra022093.1-P | Field mustard | nucleus | 21.64 | 30.0 |
| GSMUA_Achr7P00850_001 | Banana | plastid | 21.97 | 29.13 |
| GSMUA_Achr4P23050_001 | Banana | nucleus | 17.7 | 28.72 |
| GSMUA_Achr4P28300_001 | Banana | nucleus | 22.62 | 28.63 |
| Bra012650.1-P | Field mustard | nucleus | 31.15 | 27.22 |
| GSMUA_Achr5P02100_001 | Banana | plastid | 20.98 | 26.23 |
| GSMUA_Achr10P... | Banana | cytosol, extracellular, nucleus, plastid | 23.28 | 24.65 |
| GSMUA_Achr2P21330_001 | Banana | nucleus | 22.95 | 24.39 |
| GSMUA_Achr2P13160_001 | Banana | plastid | 19.67 | 24.29 |
| GSMUA_Achr6P11810_001 | Banana | nucleus | 23.93 | 24.01 |
| GSMUA_Achr4P32070_001 | Banana | nucleus | 22.3 | 23.78 |
| GSMUA_Achr10P... | Banana | nucleus | 23.93 | 22.96 |
| GSMUA_Achr6P31690_001 | Banana | nucleus | 21.64 | 22.15 |
| GSMUA_Achr11P... | Banana | nucleus | 22.62 | 21.63 |
| GSMUA_Achr6P16260_001 | Banana | nucleus | 23.28 | 21.07 |
| GSMUA_Achr9P09830_001 | Banana | nucleus | 21.64 | 20.56 |
| GSMUA_Achr10P... | Banana | nucleus | 21.31 | 20.44 |
| GSMUA_Achr6P08300_001 | Banana | plastid | 22.3 | 19.65 |
| GSMUA_Achr6P10180_001 | Banana | plastid | 21.64 | 19.02 |
| GSMUA_Achr11P... | Banana | nucleus | 21.97 | 17.91 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P30100_001 | EnsemblPlants:GSMUA_Achr4T30100_001 | EnsemblPlantsGene:GSMUA_Achr4G30100_001 | Gene3D:3.30.40.10 | InterPro:E3ligase_BOI_like | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR42647 | PANTHER:PTHR42647:SF13 |
| PFAM:PF13920 | PFscan:PS50089 | PIRSF:PIRSF036836 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI0002958E9B | UniProt:M0STC2 | MapMan:35.2 | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G30100_001]
Coordinates
chr4:-:27835192..27836720
Molecular Weight (calculated)
33029.4 Da
IEP (calculated)
7.623
GRAVY (calculated)
-0.283
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MVICSCGTTH PLIFPRWCLH LSAPYPRKRG RDAIGVPVAQ QQSHPANLFS LHGALPPPTL VSLAQLQSRP PPIVSTGLHL SFEEQHQQQN QKQSDPLTSS
101: SSCSILPSSL LPEEIAPYIN QEKDEIGKVL YAQGEQLRQA FAEKWRRHYR SLLGVAKEWA AARLREKEAD VELGMRRSAE LEDRLTRLRT ESMAWQAKAI
201: ANQATAAALH ARLQQAAAAP TPAKGGESAE DAESAFVDAD RVEPERAACR VCRGRPASVV LLPCRHLCLC DACDDDGGGS GGGGAAESCP VCRCVITASV
301: RVFLA
101: SSCSILPSSL LPEEIAPYIN QEKDEIGKVL YAQGEQLRQA FAEKWRRHYR SLLGVAKEWA AARLREKEAD VELGMRRSAE LEDRLTRLRT ESMAWQAKAI
201: ANQATAAALH ARLQQAAAAP TPAKGGESAE DAESAFVDAD RVEPERAACR VCRGRPASVV LLPCRHLCLC DACDDDGGGS GGGGAAESCP VCRCVITASV
301: RVFLA
001: MAVQAHHHPS TLFFLNNGQE GNDQPHKSQF HSINAGVDTR KRAREVSSVI DLDITAAPMN PPPQTPPQVI GRRQNPNVVS TGLRLSREQS QNQEQRFLSF
101: PITGDVAGEI KSQTDELNRF LQIQGEQLKR MLAENSERNY RELLRTTEES VRRRLREKEA EIEKATRRHV ELEARATQIE TEARAWQMRA AAREAEATSL
201: QAQLHQAVVV AHGGGVITTV EPQSGSVDGV DEAEDAESAY VDPDRVEMIG PGCRICRRRS ATVLALPCRH LVMCTECDGS VRICPLCLST KNSSVEVFYS
101: PITGDVAGEI KSQTDELNRF LQIQGEQLKR MLAENSERNY RELLRTTEES VRRRLREKEA EIEKATRRHV ELEARATQIE TEARAWQMRA AAREAEATSL
201: QAQLHQAVVV AHGGGVITTV EPQSGSVDGV DEAEDAESAY VDPDRVEMIG PGCRICRRRS ATVLALPCRH LVMCTECDGS VRICPLCLST KNSSVEVFYS
Arabidopsis Description
SBP (S-ribonuclease binding protein) family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJQ8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.