Factsheet for GSMUA_Achr3P11230_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P09630_001
GSMUA_Achr2P13050_001
GSMUA_Achr2P13060_001
GSMUA_Achr3P25070_001
GSMUA_Achr4P28360_001
GSMUA_Achr4P31660_001
GSMUA_Achr5P02420_001
GSMUA_Achr7P01060_001
GSMUA_Achr7P14150_001
GSMUA_Achr8P02960_001
GSMUA_Achr8P17120_001
GSMUA_Achr8P19510_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT1G01440.1	21798944
AT3G51180.1	GSMUA_Achr3P25070_001	AT1G01440.1	21798944
AT3G51180.1	GSMUA_Achr7P14150_001	AT1G01440.1	21798944
AT3G51180.1	GSMUA_Achr8P19510_001	AT2G29400.1	21798944
AT3G51180.1	GSMUA_Achr2P13050_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr2P13060_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr4P28360_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr4P31660_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr5P02420_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr7P01060_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr8P02960_001	AT2G34710.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT3G27960.1	21798944
AT3G51180.1	GSMUA_Achr2P09630_001	AT3G27960.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT3G51180.1	GSMUA_Achr10P...	AT4G01090.1	21798944
AT3G51180.1	GSMUA_Achr3P25070_001	AT4G01090.1	21798944
AT3G51180.1	GSMUA_Achr7P14150_001	AT4G01090.1	21798944
AT3G51180.1	GSMUA_Achr8P17120_001	AT5G04170.1	21798944
AT3G51180.1	GSMUA_AchrUn_...	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P19920_001	Banana	cytosol	59.83	62.11
EES13033	Sorghum	mitochondrion	38.88	40.0
Zm00001d001952_P001	Maize	mitochondrion	37.8	38.72
VIT_18s0001g13880.t01	Wine grape	nucleus	37.15	37.64
CDY62587	Canola	mitochondrion, nucleus	32.61	37.01
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	32.4	36.85
Bra025776.1-P	Field mustard	extracellular	31.53	36.41
KRH61063	Soybean	nucleus	33.69	36.28
CDY29391	Canola	extracellular	31.32	36.16
Zm00001d026536_P002	Maize	nucleus	37.15	35.98
CDX83740	Canola	nucleus	30.67	35.86
Bra016491.1-P	Field mustard	nucleus	30.67	35.77
AT1G19860.2	Thale cress	nucleus	31.53	35.18
CDY39347	Canola	mitochondrion	31.1	34.2
TraesCS2B01G520300.1	Wheat	mitochondrion	38.88	33.64
TraesCS2A01G492200.1	Wheat	mitochondrion	38.88	32.43
HORVU2Hr1G109820.1	Barley	mitochondrion	36.93	32.39
TraesCS2D01G492400.1	Wheat	mitochondrion	38.66	32.31
Bra012068.1-P	Field mustard	cytosol	12.31	31.67
Os04t0663200-01	Rice	cytosol	26.57	31.3
Solyc12g089260.1.1	Tomato	nucleus	32.61	30.94
PGSC0003DMT400075650	Potato	nucleus	32.61	30.88
KRH28783	Soybean	nucleus	21.6	28.65
HORVU2Hr1G109740.2	Barley	plastid	37.15	27.83
KRH69800	Soybean	plastid	31.1	25.95
KRH69802	Soybean	mitochondrion	30.45	24.78
Solyc02g084080.1.1	Tomato	cytosol	6.48	24.19
AT5G66270.1	Thale cress	cytosol	23.33	24.05
KRH28782	Soybean	cytosol, nucleus, plastid	25.27	23.73
CDY67080	Canola	cytosol, nucleus, plastid	20.09	23.48
Solyc02g038790.1.1	Tomato	cytosol	10.15	23.38
CDY45225	Canola	cytosol, nucleus, plastid	19.65	22.25
CDX73744	Canola	mitochondrion, nucleus	23.33	21.64
AT3G51180.1	Thale cress	nucleus	23.76	21.11
CDX77980	Canola	mitochondrion, nucleus, plastid	20.95	20.55
Bra036832.1-P	Field mustard	nucleus	20.73	19.35
KRH76672	Soybean	nucleus	15.77	18.77
Solyc02g084160.1.1	Tomato	cytosol	6.26	18.24
VIT_04s0023g03180.t01	Wine grape	cytosol	27.0	17.56
Solyc02g084110.1.1	Tomato	cytosol	5.62	17.11
PGSC0003DMT400009146	Potato	nucleus	22.03	16.86
Solyc02g084200.1.1	Tomato	nucleus	20.09	15.66
PGSC0003DMT400092162	Potato	nucleus	16.63	13.73
PGSC0003DMT400009142	Potato	plasma membrane	14.9	12.78

Protein Annotations

EnsemblPlants:GSMUA_Achr3P11230_001	EnsemblPlants:GSMUA_Achr3T11230_001	EnsemblPlantsGene:GSMUA_Achr3G11230_001	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR000571	InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	PFscan:PS50103
SEG:seg	SUPFAM:SSF90229	UniParc:UPI000295D69B	UniProt:M0SDP0	MapMan:15.5.16	:

Description

Putative Zinc finger CCCH domain-containing protein 30 [Source:GMGC_GENE;Acc:GSMUA_Achr3G11230_001]

Coordinates

chr3:+:8344720..8350636

Molecular Weight (calculated)

50336.4 Da

IEP (calculated)

7.535

GRAVY (calculated)

-0.451

Length

463 amino acids

Sequence
(BLAST)

001: MAGWKQSKRV SWAKELHQVR LFLAEDAPAI SGAGTQDHLQ AKGSWLLHAA STGNDDSSLP PGFEAPHPAY KLRSEISQIP LIKWTCPIQV LVNPEWLVAA
101: GEESAEVAVQ SQRQVSLLEA IYPRLTSVPP NPSVSSEVQD SVYNDFQTPV IPVTAIEDED SSEQFETARS AAASPQVQQT NDHNLQGMIK KHDLPNLNSV
201: TTQIQHRDVQ TMHHGETTAG RIIQIAKPDV ATAASAAFTA IMKSSEDGSM IDRDLLIRIL SNPSLVEKLV SEHGAPKQAR VPLASAAVSH PHPYVPVQAP
301: ALAPAVPPQL PHINTGTCSP FPVLRNTQMY PFPSSMPPQA ANSHASHIQI CVQAAAKDAN YLKGLVHQHG GEKQDSPDLN FVHAANYQNN IAATNAVDPF
401: GSTQQREAKP KIPRPCAYFN TPKGCRHGES CSYQHVPSLP RRTEQPRGSK RIKLDRGIAG RNY

Best Arabidopsis Sequence Match ( AT1G19860.1 )
(BLAST)

001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD

Arabidopsis Description

Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.