Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400075650 | Potato | nucleus | 94.67 | 94.48 |
| VIT_18s0001g13880.t01 | Wine grape | nucleus | 49.18 | 52.52 |
| KRH61063 | Soybean | nucleus | 37.91 | 43.02 |
| KRH51726 | Soybean | cytosol, mitochondrion, nucleus, plastid | 35.45 | 42.51 |
| CDY62587 | Canola | mitochondrion, nucleus | 35.25 | 42.16 |
| CDX83740 | Canola | nucleus | 33.2 | 40.91 |
| Bra016491.1-P | Field mustard | nucleus | 32.79 | 40.3 |
| CDY29391 | Canola | extracellular | 32.99 | 40.15 |
| Bra025776.1-P | Field mustard | extracellular | 32.99 | 40.15 |
| CDY39347 | Canola | mitochondrion | 34.22 | 39.67 |
| AT1G19860.2 | Thale cress | nucleus | 33.2 | 39.04 |
| EES13033 | Sorghum | mitochondrion | 35.86 | 38.89 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 34.22 | 37.44 |
| Zm00001d001952_P001 | Maize | mitochondrion | 33.61 | 36.28 |
| Zm00001d026536_P002 | Maize | nucleus | 32.79 | 33.47 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 30.94 | 32.61 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 34.22 | 31.63 |
| TraesCS2B01G520300.1 | Wheat | mitochondrion | 34.43 | 31.4 |
| TraesCS2D01G492400.1 | Wheat | mitochondrion | 34.43 | 30.32 |
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 34.43 | 30.27 |
| Os04t0663200-01 | Rice | cytosol | 22.54 | 27.99 |
| HORVU2Hr1G109740.2 | Barley | plastid | 34.43 | 27.18 |
| Solyc02g084080.1.1 | Tomato | cytosol | 6.76 | 26.61 |
| Solyc02g038790.1.1 | Tomato | cytosol | 10.25 | 24.88 |
| Solyc02g084200.1.1 | Tomato | nucleus | 20.7 | 17.0 |
| Solyc02g084160.1.1 | Tomato | cytosol | 5.53 | 16.98 |
| Solyc02g084110.1.1 | Tomato | cytosol | 5.12 | 16.45 |
Protein Annotations
| EnsemblPlants:Solyc12g089260.1.1 | EnsemblPlantsGene:Solyc12g089260.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000571 |
| InterPro:Znf_CCCH | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 | PFscan:PS50103 | SEG:seg | UniParc:UPI0002769737 |
| UniProt:K4DGZ7 | MapMan:15.5.16 | : | : | : | : |
Description
No Description!
Coordinates
chr12:+:64366989..64375264
Molecular Weight (calculated)
52111.6 Da
IEP (calculated)
7.723
GRAVY (calculated)
-0.471
Length
488 amino acids
Sequence
(BLAST)
(BLAST)
001: MRGREKSKRV TWASDDSLCQ VKLFLSDDSP SQVGLGGAQD HLQAKISLPL HAGLLVSDDN LPPGFEGAQP ASLWKNKVAQ IPVIKWRRPP SFVLDTSWRV
101: VAGEESNDME VQKQREMRVL EAIYPRESSI PPNPSMGPGD ETLHNDQHTP VVPLTPVEEE EVADPSFGTA VPTNGASSTA QVMQSGVPLG NRSAGNSLPV
201: HGISSPGGVP GLGLDAVAEA QAALTAFMAD SGQGNLIDRD LLIKILSDPK IVGQLVTHQG VGTSSHSVPA MNTQSISAAN LMPNARPQAS SIAAPSQPVV
301: SRANPSFYHS GRTDPPPVQV SRTELVIPSM AGATNGPFHS APSRIGPVSG LRPRIPEAMS APLPAPVATM STPTSSMPAP VARDINYYKS LIQQHGGERQ
401: ETLPPQYNNH RNNQQLGSVQ ESQNSYNSRD SKPKIMKPCI YYNSSRGCRH GANCAYLHDA SPQQRGVGSL PEVQSSKRMK MDREITGT
101: VAGEESNDME VQKQREMRVL EAIYPRESSI PPNPSMGPGD ETLHNDQHTP VVPLTPVEEE EVADPSFGTA VPTNGASSTA QVMQSGVPLG NRSAGNSLPV
201: HGISSPGGVP GLGLDAVAEA QAALTAFMAD SGQGNLIDRD LLIKILSDPK IVGQLVTHQG VGTSSHSVPA MNTQSISAAN LMPNARPQAS SIAAPSQPVV
301: SRANPSFYHS GRTDPPPVQV SRTELVIPSM AGATNGPFHS APSRIGPVSG LRPRIPEAMS APLPAPVATM STPTSSMPAP VARDINYYKS LIQQHGGERQ
401: ETLPPQYNNH RNNQQLGSVQ ESQNSYNSRD SKPKIMKPCI YYNSSRGCRH GANCAYLHDA SPQQRGVGSL PEVQSSKRMK MDREITGT
001: MRALHKRVSW PPDFKLCQVR LFISEDSPSQ VGSESQDHLQ AKSPLASHPS DDNLPPGFGG PFSANESQIK LSDIPLIKWK CSVQILLDRE WKVVAGDESK
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
101: EVEAQNEREL RVLEAFYPGA SSIPPNPSVP ADVEDSHHDD QQTIVIPILP VEDDDIAMDS ASDFPTQSGV DVGTEPSITD ENTSTSSTLP AGPDIMAALS
201: AISNSKEQGS MIDQDLLIKI LSNPKLVENL VANRGSAGSV SSNTSSLYSS STHEANGVVT TAPISSNGQF YAQPPITHIP PMAYTPHAPQ DQPNYGAPPA
301: RDASYYKNLI QQHGGDRQET PPVQHLGYRY NLQPGGGPNP EMVNSSNNNQ RPRDSKPKIM KACMYFNSAR GCRHGANCMY QHDATPYQPR NLNNGNINTS
401: DMQNAKRMRF DRD
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.