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Rice
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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Os01t0621300-01
Os02t0258300-01
Os02t0708400-01
Os03t0268000-01
Os03t0640800-01
Os05t0586400-01
Os06t0524300-01
Os11t0104866-00
Os11t0104900-00
Os11t0140600-01
Os12t0104766-00
Os12t0104800-01
Os12t0137100-01
Os12t0612700-01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G51180.1 Os01t0621300-01 AT1G01440.1 21798944
AT3G51180.1 Os02t0258300-01 AT1G01440.1 21798944
AT3G51180.1 Os05t0586400-01 AT1G01440.1 21798944
AT3G51180.1 Os06t0524300-01 AT1G01440.1 21798944
AT3G51180.1 Os03t0268000-01 AT2G29400.1 21798944
AT3G51180.1 Os03t0640800-01 AT2G34710.1 21798944
AT3G51180.1 Os12t0612700-01 AT2G34710.1 21798944
AT3G51180.1 Os11t0104866-00 AT3G08530.1 21798944
AT3G51180.1 Os11t0104900-00 AT3G08530.1 21798944
AT3G51180.1 Os12t0104766-00 AT3G08530.1 21798944
AT3G51180.1 Os12t0104800-01 AT3G08530.1 21798944
AT3G51180.1 Os02t0708400-01 AT3G27960.1 21798944
AT3G51180.1 Os01t0621300-01 AT4G01090.1 21798944
AT3G51180.1 Os02t0258300-01 AT4G01090.1 21798944
AT3G51180.1 Os05t0586400-01 AT4G01090.1 21798944
AT3G51180.1 Os06t0524300-01 AT4G01090.1 21798944
AT3G51180.1 Os11t0140600-01 AT5G04170.1 21798944
AT3G51180.1 Os12t0137100-01 AT5G04170.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES13033 Sorghum mitochondrion 50.38 44.0
Zm00001d001952_P001 Maize mitochondrion 48.6 42.26
Zm00001d026536_P002 Maize nucleus 48.6 39.96
TraesCS2B01G520300.1 Wheat mitochondrion 50.38 37.01
TraesCS2D01G492400.1 Wheat mitochondrion 51.65 36.64
TraesCS2A01G492200.1 Wheat mitochondrion 51.15 36.22
HORVU2Hr1G109820.1 Barley mitochondrion 48.6 36.17
HORVU2Hr1G109740.2 Barley plastid 48.85 31.07
CDX83740 Canola nucleus 30.53 30.3
Bra016491.1-P Field mustard nucleus 30.28 29.97
CDY62587 Canola mitochondrion, nucleus 30.53 29.41
GSMUA_Achr1P19920_001 Banana cytosol 32.32 28.48
AT1G19860.2 Thale cress nucleus 30.03 28.43
CDY39347 Canola mitochondrion 30.28 28.27
Solyc02g084080.1.1 Tomato cytosol 8.91 28.23
CDY29391 Canola extracellular 28.5 27.93
Bra025776.1-P Field mustard extracellular 28.5 27.93
VIT_18s0001g13880.t01 Wine grape nucleus 31.81 27.35
GSMUA_Achr3P11230_001 Banana cytosol 31.3 26.57
Bra012068.1-P Field mustard cytosol 11.96 26.11
KRH61063 Soybean nucleus 28.5 26.05
KRH28783 Soybean nucleus 21.63 24.36
KRH51726 Soybean cytosol, mitochondrion, nucleus, plastid 24.68 23.83
PGSC0003DMT400075650 Potato nucleus 29.26 23.52
Solyc12g089260.1.1 Tomato nucleus 27.99 22.54
CDY67080 Canola cytosol, nucleus, plastid 19.34 19.19
Solyc02g038790.1.1 Tomato cytosol 9.41 18.41
KRH69800 Soybean plastid 25.95 18.38
AT5G66270.1 Thale cress cytosol 20.61 18.04
CDY45225 Canola cytosol, nucleus, plastid 18.07 17.36
KRH69802 Soybean mitochondrion 24.68 17.05
KRH76672 Soybean nucleus 16.29 16.45
KRH28782 Soybean cytosol, nucleus, plastid 20.61 16.43
Solyc02g084160.1.1 Tomato cytosol 6.62 16.35
Bra036832.1-P Field mustard nucleus 19.59 15.52
CDX77980 Canola mitochondrion, nucleus, plastid 18.58 15.47
CDX73744 Canola mitochondrion, nucleus 19.08 15.03
AT3G51180.1 Thale cress nucleus 19.85 14.97
PGSC0003DMT400009146 Potato nucleus 21.37 13.88
Solyc02g084110.1.1 Tomato cytosol 5.34 13.82
Solyc02g084200.1.1 Tomato nucleus 20.87 13.8
VIT_04s0023g03180.t01 Wine grape cytosol 23.66 13.06
PGSC0003DMT400092162 Potato nucleus 17.05 11.94
PGSC0003DMT400009142 Potato plasma membrane 15.27 11.11
Protein Annotations
EnsemblPlants:Os04t0663200-01EnsemblPlantsGene:Os04g0663200GO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0005488
GO:GO:0046872InterPro:IPR000571InterPro:Znf_CCCHInterPro:Znf_CCCH_sfPANTHER:PTHR33400PANTHER:PTHR33400:SF2
PFscan:PS50103ProteinID:BAS91477.1SEG:segSUPFAM:SSF90229UniParc:UPI0000DD9315UniProt:A0A0P0WFW2
MapMan:15.5.16:::::
Description
ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 30Zinc finger, CCCH-type domain containing protein. (Os04t0663200-01);Similar to OSIGBa0099L20.3 protein. (Os04t0663200-02)
Coordinates
chr4:-:33848663..33850175
Molecular Weight (calculated)
42299.1 Da
IEP (calculated)
6.569
GRAVY (calculated)
-0.494
Length
393 amino acids
Sequence
(BLAST)
001: MSQIPLIRWK CPPHIVLEQD WHIVAGEESR EIEIQNERIN GALEAIYPRP SNIPPNPFLS LDVKDAHYDD SKTLLVPLIP LEDDDASDQL EGPTLDLPSH
101: YNITGVSNTP VSAEQQPPCG GAISSGFTIE PQAAVSATVT AIMQTIQSNQ NGSMADQNGS TIDQELLFKI LSDPSQLQRL MKECGPVRHE QSASSSVVAP
201: LVSIPPPQIT ASSPAPFSDH VGTFHGMNPT LPPPPPMMNR PPSTIPSVAM NHPPSSSPAM NFGSALPSSS PSVNFGSVPG RGVGYYKTLI HQHGGERLEQ
301: PFEQHGMQFG MYRQPGPPQN GGIDAMNGAA AMVSRDGKVR PMKPCAYFNS PKGCRNGASC TFLHDASAPT RKDHQKQKGS KRIKLDNTMG GRN
Best Arabidopsis Sequence Match ( AT1G19860.2 )
(BLAST)
001: MLTSPCLLSL DCMFEITGPM VRLFISEDSP SQVGSESQDH LQAKSPLASH PSDDNLPPGF GGPFSANESQ IKLSDIPLIK WKCSVQILLD REWKVVAGDE
101: SKEVEAQNER ELRVLEAFYP GASSIPPNPS VPADVEDSHH DDQQTIVIPI LPVEDDDIAM DSASDFPTQS GVDVGTEPSI TDENTSTSST LPAGPDIMAA
201: LSAISNSKEQ GSMIDQDLLI KILSNPKLVE NLVANRGSAG SVSSNTSSLY SSSTHEANGV VTTAPISSNG QFYAQPPITH IPPMAYTPHA PQDQPNYGAP
301: PARDASYYKN LIQQHGGDRQ ETPPVQHLGY RYNLQPGGGP NPEMVNSSNN NQRPRDSKPK IMKACMYFNS ARGCRHGANC MYQHDATPYQ PRNLNNGNIN
401: TSDMQNAKRM RFDRD
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.