Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g038790.1.1 | Tomato | cytosol | 19.61 | 54.73 |
| PGSC0003DMT400009146 | Potato | nucleus | 51.87 | 48.1 |
| PGSC0003DMT400009142 | Potato | plasma membrane | 29.23 | 30.37 |
| Bra012068.1-P | Field mustard | cytosol | 9.63 | 30.0 |
| Solyc02g084110.1.1 | Tomato | cytosol | 7.84 | 28.95 |
| KRH28782 | Soybean | cytosol, nucleus, plastid | 18.54 | 21.1 |
| KRH76672 | Soybean | nucleus | 14.62 | 21.08 |
| CDY67080 | Canola | cytosol, nucleus, plastid | 14.79 | 20.96 |
| KRH28783 | Soybean | nucleus | 12.83 | 20.63 |
| AT5G66270.1 | Thale cress | cytosol | 16.4 | 20.49 |
| CDY45225 | Canola | cytosol, nucleus, plastid | 14.79 | 20.29 |
| KRH69800 | Soybean | plastid | 18.89 | 19.1 |
| KRH69802 | Soybean | mitochondrion | 18.54 | 18.28 |
| CDX73744 | Canola | mitochondrion, nucleus | 16.22 | 18.24 |
| EES13033 | Sorghum | mitochondrion | 14.08 | 17.56 |
| GSMUA_Achr1P19920_001 | Banana | cytosol | 13.9 | 17.49 |
| Bra036832.1-P | Field mustard | nucleus | 15.33 | 17.34 |
| Zm00001d026536_P002 | Maize | nucleus | 14.62 | 17.15 |
| Os04t0663200-01 | Rice | cytosol | 11.94 | 17.05 |
| PGSC0003DMT400075650 | Potato | nucleus | 14.79 | 16.97 |
| CDX77980 | Canola | mitochondrion, nucleus, plastid | 14.26 | 16.95 |
| AT3G51180.1 | Thale cress | nucleus | 15.51 | 16.7 |
| GSMUA_Achr3P11230_001 | Banana | cytosol | 13.73 | 16.63 |
| Zm00001d001952_P001 | Maize | mitochondrion | 13.37 | 16.59 |
| TraesCS2B01G520300.1 | Wheat | mitochondrion | 15.51 | 16.26 |
| HORVU2Hr1G109820.1 | Barley | mitochondrion | 15.15 | 16.1 |
| TraesCS2D01G492400.1 | Wheat | mitochondrion | 15.51 | 15.7 |
| TraesCS2A01G492200.1 | Wheat | mitochondrion | 15.51 | 15.68 |
| VIT_04s0023g03180.t01 | Wine grape | cytosol | 18.89 | 14.89 |
| HORVU2Hr1G109740.2 | Barley | plastid | 15.15 | 13.75 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400092162 | EnsemblPlantsGene:PGSC0003DMG400041733 | EntrezGene:102598674 | ncoils:Coil | PANTHER:PTHR33400 | PANTHER:PTHR33400:SF2 |
| PGSC:PGSC0003DMG400041733 | RefSeq:XP_006340938.1 | SEG:seg | UniParc:UPI000295E847 | UniProt:M1DP82 | MapMan:15.5.16 |
Description
Zinc finger (CCCH-type) family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400041733]
Coordinates
chr2:-:39529103..39531914
Molecular Weight (calculated)
62513.4 Da
IEP (calculated)
10.463
GRAVY (calculated)
-0.820
Length
561 amino acids
Sequence
(BLAST)
(BLAST)
001: MNIKEVKHYR KEDCPSKVGS RSQQHTQLKQ THQSIDRSSS EKRYCLKKSK ERLSSKSLAI WKCPPKFHLN EKWLVVAGEE SKETSKQEDR KRRVIEAVFP
101: NRSAIPPNTS SVKIVTSQKL PDNGKSLPKS LSTFPNPRKP PRNSFFSKKT PFNVQSTPLY HSRYQNLTGS EQSQVSPKLP VSYNSVPQYR PTFKNIGTQT
201: ETFPDQPANE NHEPKYRTTY ENQNIPQLKS QVSGMALAKH NPITESPSTR DLTVDVATAV AALAKSQEQG SRIDTNLLVR LLLNPEEIPK LMNERGMNTN
301: VATAAAVAVS LNTAMSRPVD LLVPLTRTKP DKVINKPINE CQAPHAGSGQ SFGPKPMAKS VPLIMTKPET SVKSDLVNEQ GTPPQVETAN IRESKSLTYF
401: SSDLDLENIK KLISKYGVPD NAGGKPLVNF ELVSRYGPTS LQPNLSLSPN VGHTSPSSSM TSHSPLHKDI INYYKSLIKQ RGEKSEPMVD ESLQNTNPHG
501: TTRGTDLLKN QKPIPHSLTP CVFFNKPKGC HNGSYYRFLH DISGKKRSGG RSKGRDSKRM K
101: NRSAIPPNTS SVKIVTSQKL PDNGKSLPKS LSTFPNPRKP PRNSFFSKKT PFNVQSTPLY HSRYQNLTGS EQSQVSPKLP VSYNSVPQYR PTFKNIGTQT
201: ETFPDQPANE NHEPKYRTTY ENQNIPQLKS QVSGMALAKH NPITESPSTR DLTVDVATAV AALAKSQEQG SRIDTNLLVR LLLNPEEIPK LMNERGMNTN
301: VATAAAVAVS LNTAMSRPVD LLVPLTRTKP DKVINKPINE CQAPHAGSGQ SFGPKPMAKS VPLIMTKPET SVKSDLVNEQ GTPPQVETAN IRESKSLTYF
401: SSDLDLENIK KLISKYGVPD NAGGKPLVNF ELVSRYGPTS LQPNLSLSPN VGHTSPSSSM TSHSPLHKDI INYYKSLIKQ RGEKSEPMVD ESLQNTNPHG
501: TTRGTDLLKN QKPIPHSLTP CVFFNKPKGC HNGSYYRFLH DISGKKRSGG RSKGRDSKRM K
001: MLTSPCLLSL DCMFEITGPM VRLFISEDSP SQVGSESQDH LQAKSPLASH PSDDNLPPGF GGPFSANESQ IKLSDIPLIK WKCSVQILLD REWKVVAGDE
101: SKEVEAQNER ELRVLEAFYP GASSIPPNPS VPADVEDSHH DDQQTIVIPI LPVEDDDIAM DSASDFPTQS GVDVGTEPSI TDENTSTSST LPAGPDIMAA
201: LSAISNSKEQ GSMIDQDLLI KILSNPKLVE NLVANRGSAG SVSSNTSSLY SSSTHEANGV VTTAPISSNG QFYAQPPITH IPPMAYTPHA PQDQPNYGAP
301: PARDASYYKN LIQQHGGDRQ ETPPVQHLGY RYNLQPGGGP NPEMVNSSNN NQRPRDSKPK IMKACMYFNS ARGCRHGANC MYQHDATPYQ PRNLNNGNIN
401: TSDMQNAKRM RFDRD
101: SKEVEAQNER ELRVLEAFYP GASSIPPNPS VPADVEDSHH DDQQTIVIPI LPVEDDDIAM DSASDFPTQS GVDVGTEPSI TDENTSTSST LPAGPDIMAA
201: LSAISNSKEQ GSMIDQDLLI KILSNPKLVE NLVANRGSAG SVSSNTSSLY SSSTHEANGV VTTAPISSNG QFYAQPPITH IPPMAYTPHA PQDQPNYGAP
301: PARDASYYKN LIQQHGGDRQ ETPPVQHLGY RYNLQPGGGP NPEMVNSSNN NQRPRDSKPK IMKACMYFNS ARGCRHGANC MYQHDATPYQ PRNLNNGNIN
401: TSDMQNAKRM RFDRD
Arabidopsis Description
Zinc finger C-x8-C-x5-C-x3-H type family protein [Source:TAIR;Acc:AT1G19860]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.