CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70254
CDX79176
CDX80907
CDX83308
CDX84286
CDX86457
CDX90032
CDX91876
CDX95749
CDY07174
CDY15177
CDY31635
CDY40180
CDY41394
CDY43661
CDY45437
CDY48504
CDY58518
CDY67472
CDY67475

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	CDX90032	AT1G01440.1	21798944
AT3G51180.1	CDY15177	AT1G01440.1	21798944
AT3G51180.1	CDX83308	AT2G29400.1	21798944
AT3G51180.1	CDX95749	AT2G29400.1	21798944
AT3G51180.1	CDY40180	AT2G29400.1	21798944
AT3G51180.1	CDY45437	AT2G29400.1	21798944
AT3G51180.1	CDX84286	AT2G34710.1	21798944
AT3G51180.1	CDY31635	AT2G34710.1	21798944
AT3G51180.1	CDY43661	AT2G34710.1	21798944
AT3G51180.1	CDX86457	AT3G27960.1	21798944
AT3G51180.1	CDY58518	AT3G27960.1	21798944
AT3G51180.1	CDX79176	AT4G01090.1	21798944
AT3G51180.1	CDX91876	AT4G01090.1	21798944
AT3G51180.1	CDY07174	AT4G01090.1	21798944
AT3G51180.1	CDY48504	AT4G01090.1	21798944
AT3G51180.1	CDY67475	AT4G01090.1	21798944
AT3G51180.1	CDX70254	AT5G04170.1	21798944
AT3G51180.1	CDX80907	AT5G04170.1	21798944
AT3G51180.1	CDY41394	AT5G04170.1	21798944
AT3G51180.1	CDY67472	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX77980	Canola	mitochondrion, nucleus, plastid	82.16	86.86
Bra036832.1-P	Field mustard	nucleus	82.97	83.47
AT3G51180.1	Thale cress	nucleus	60.72	58.16
CDY67080	Canola	cytosol, nucleus, plastid	27.45	34.6
CDY45225	Canola	cytosol, nucleus, plastid	28.06	34.23
Solyc02g084080.1.1	Tomato	cytosol	8.22	33.06
Solyc02g038790.1.1	Tomato	cytosol	11.22	27.86
KRH28782	Soybean	cytosol, nucleus, plastid	26.45	26.77
CDY39347	Canola	mitochondrion	22.24	26.37
CDY62587	Canola	mitochondrion, nucleus	21.44	26.23
CDY29391	Canola	extracellular	20.84	25.94
KRH28783	Soybean	nucleus	17.84	25.5
Solyc02g084160.1.1	Tomato	cytosol	7.82	24.53
KRH69800	Soybean	plastid	27.05	24.32
EES13033	Sorghum	mitochondrion	21.64	24.0
GSMUA_Achr1P19920_001	Banana	cytosol	21.44	23.99
CDX83740	Canola	nucleus	19.04	23.99
KRH69802	Soybean	mitochondrion	27.25	23.9
GSMUA_Achr3P11230_001	Banana	cytosol	21.64	23.33
Zm00001d001952_P001	Maize	mitochondrion	21.04	23.23
KRH76672	Soybean	nucleus	17.23	22.11
HORVU2Hr1G109820.1	Barley	mitochondrion	21.84	20.64
TraesCS2B01G520300.1	Wheat	mitochondrion	22.04	20.56
Zm00001d026536_P002	Maize	nucleus	19.24	20.08
TraesCS2A01G492200.1	Wheat	mitochondrion	22.24	20.0
TraesCS2D01G492400.1	Wheat	mitochondrion	21.84	19.68
Os04t0663200-01	Rice	cytosol	15.03	19.08
Solyc02g084110.1.1	Tomato	cytosol	5.81	19.08
VIT_04s0023g03180.t01	Wine grape	cytosol	25.85	18.12
HORVU2Hr1G109740.2	Barley	plastid	22.04	17.8
PGSC0003DMT400009146	Potato	nucleus	21.24	17.52
Solyc02g084200.1.1	Tomato	nucleus	20.84	17.51
PGSC0003DMT400092162	Potato	nucleus	18.24	16.22
PGSC0003DMT400009142	Potato	plasma membrane	16.23	15.0

Protein Annotations

EnsemblPlants:CDX73744	EnsemblPlantsGene:GSBRNA2T00109350001	PANTHER:PTHR33400	PANTHER:PTHR33400:SF2	ProteinID:CDX73744	ProteinID:CDX73744.1
SEG:seg	UniParc:UPI0004EEF212	MapMan:15.5.16	:	:	:

Description

BnaC08g22590D

Coordinates

chrLK031799:-:2437675..2440198

Molecular Weight (calculated)

55355.2 Da

IEP (calculated)

10.396

GRAVY (calculated)

-0.700

Length

499 amino acids

Sequence
(BLAST)

001: MNIMKRSKKS RVSWPSGPKL CQVKLFRTED CPAKVASQAH RHTHPKQSIS KPRVPDLPPG FEGNHYAEKL SVSTIPRIKW KRPSKFIVSG TWLMGDGGES
101: TERRTENLRI SKVLEAIYPH RSTIPSRPSV SPVVEAESFD DSKTPTIRLT PIEDESESSE ESSNTTASKQ SSLETKPSIQ GLVSGPAPEL SLAAASAALA
201: ALMKTKEQGS MIDPHLLIKL LSNPKMIKHL ITDTTGKSSE PKNQPLETNT INPTRLVAEH ATPLPMTKPQ PTIIPQKQGF TASQPFTNPE QRRVSPPKPV
301: NQNISPLNQV PVSIPMSVQP CVISIATQPP LPARLPSSSL PMNVNPHQRP PRVFSEPKVT VNPPHHNSAY RTPEMNIVQA PVVFGRGPQT GFNNYPMNLN
401: RTGKPVVQPM KSDDYFKNLI REHGTANHET NQYHSQNGKF NGRIDQNKVQ KQCIYYGTAR GCQMGDRCVC VHDRLRPNFE AEAPGAKRLK FGSYDRNNF

Best Arabidopsis Sequence Match ( AT3G51180.1 )
(BLAST)

001: MNNMKRSKKP RVSWPPGPKL CQVKVFRTED SPANVASQPQ RHSYPSRKPR GPDLPPGFEG NHYAVKPNVS NIPRIKWKRP PPKFSVNDTW LVGCGGGSSE
101: WQNENLRISK VLEAIYPHRS AIPSRPSVSP AVEAECFDDS KTPAIRLTPI EDESESSSEE SSNSKVESGV TANKQGQLET KPLCSTQEQV SGLTGLAPDL
201: SLAASAALTA LMKTKEQGSL VDTELLIKFL SDPKLIKNLI TDTSGKSSET KNQPIVTNIN SATRPVPQPV SAVTASPMAR KPQPVIIPQE HSVAVSRSFT
301: NPERRVSPPK PVNGSISPPK PITGKPSSIP MPVHFHVGIA KEQPQPARFP SSSLPMNLNF HRPPNVFSEP KVIVNPQPQH QPYSAFRTSE MNYVQSSIGL
401: GRGPQTGFNS YPMNFSRADA IGSAKPVVQP MKGLDYFKNL IREHGTDNHE TNQYHSQTGI FNGRIDNNNK IHQQCIYFGT ANGCNMGDSC TYVHDRYRPN
501: FEAAAPRAKR MKFGRYERNG F

Arabidopsis Description

Zinc finger CCCH domain-containing protein 45 [Source:UniProtKB/Swiss-Prot;Acc:Q94C33]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.