CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93305
KRG97711
KRH11775
KRH14933
KRH31163
KRH36781
KRH43001
KRH56614
KRH59117
KRH72037
KRH73205

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51180.1	KRH11775	AT2G34710.1	21798944
AT3G51180.1	KRH36781	AT2G34710.1	21798944
AT3G51180.1	KRH43001	AT2G34710.1	21798944
AT3G51180.1	KRH59117	AT2G34710.1	21798944
AT3G51180.1	KRG97711	AT3G08530.1	21798944
AT3G51180.1	KRH14933	AT3G08530.1	21798944
AT3G51180.1	KRH31163	AT3G08530.1	21798944
AT3G51180.1	KRH73205	AT3G08530.1	21798944
AT3G51180.1	KRG93305	AT3G27960.1	21798944
AT3G51180.1	KRH56614	AT3G27960.1	21798944
AT3G51180.1	KRH72037	AT5G04170.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69802	Soybean	mitochondrion	70.81	69.07
KRH28782	Soybean	cytosol, nucleus, plastid	36.4	40.97
KRH76672	Soybean	nucleus	26.13	37.28
KRH51726	Soybean	cytosol, mitochondrion, nucleus, plastid	26.31	35.87
Bra012068.1-P	Field mustard	cytosol	11.17	34.44
Solyc02g084080.1.1	Tomato	cytosol	7.57	33.87
KRH28783	Soybean	nucleus	21.26	33.81
KRH61063	Soybean	nucleus	25.05	32.33
Zm00001d001952_P001	Maize	mitochondrion	25.95	31.86
GSMUA_Achr1P19920_001	Banana	cytosol	25.41	31.61
EES13033	Sorghum	mitochondrion	25.23	31.11
GSMUA_Achr3P11230_001	Banana	cytosol	25.95	31.1
AT5G66270.1	Thale cress	cytosol	24.68	30.51
CDY45225	Canola	cytosol, nucleus, plastid	21.98	29.83
Zm00001d026536_P002	Maize	nucleus	25.05	29.08
Solyc02g038790.1.1	Tomato	cytosol	10.45	28.86
HORVU2Hr1G109820.1	Barley	mitochondrion	26.49	27.84
CDY67080	Canola	cytosol, nucleus, plastid	19.46	27.27
TraesCS2B01G520300.1	Wheat	mitochondrion	26.13	27.1
CDX73744	Canola	mitochondrion, nucleus	24.32	27.05
TraesCS2A01G492200.1	Wheat	mitochondrion	27.03	27.03
CDX77980	Canola	mitochondrion, nucleus, plastid	22.88	26.91
TraesCS2D01G492400.1	Wheat	mitochondrion	26.49	26.53
Os04t0663200-01	Rice	cytosol	18.38	25.95
AT3G51180.1	Thale cress	nucleus	24.32	25.91
VIT_04s0023g03180.t01	Wine grape	cytosol	32.79	25.56
Bra036832.1-P	Field mustard	nucleus	21.98	24.6
HORVU2Hr1G109740.2	Barley	plastid	26.85	24.11
Solyc02g084160.1.1	Tomato	cytosol	6.85	23.9
PGSC0003DMT400009146	Potato	nucleus	24.68	22.64
Solyc02g084200.1.1	Tomato	nucleus	23.24	21.72
Solyc02g084110.1.1	Tomato	cytosol	5.23	19.08
PGSC0003DMT400092162	Potato	nucleus	19.1	18.89
PGSC0003DMT400009142	Potato	plasma membrane	17.48	17.96

Protein Annotations

EMBL:ACUP02000729	EnsemblPlants:KRH69800	EnsemblPlantsGene:GLYMA_02G049600	EntrezGene:100783272	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR000571	InterPro:Znf_CCCH
PANTHER:PTHR33400	PANTHER:PTHR33400:SF5	PFscan:PS50103	ProteinID:KRH69800	ProteinID:KRH69800.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI0003DE8F6F	UniProt:A0A0R0KZE9	MapMan:15.5.16	:	:

Description

hypothetical protein

Coordinates

chr2:-:4500912..4508232

Molecular Weight (calculated)

60331.7 Da

IEP (calculated)

8.110

GRAVY (calculated)

-0.367

Length

555 amino acids

Sequence
(BLAST)

001: MRCHQNYKRL TFLFANPIDS TSIVNLSVFT LIRFDMKRAR KSNRVSWATG DNLCQVKLFL SEDFPSIVGQ KSQDHLQAKT SSMLHSSINE PNDLPPGFES
101: SHFLNQPKVE FSNIPQIKWE CPPVVVVRSQ WRVAAGEESR EKENQKLREM RVLEALYPRL SAIPPSPSVS LDVEEEDYDD GRTPLIPIIP IEEEESTDIL
201: PELAVALKPS PNVQSQNSQQ YISAKTSISS ASNAAHAVSL DPCIRPMAGV SSGMEADLAA ASSVVATIIR SNEQGTLIDM DLLGKIFTDP KILEQLINEH
301: GTAATTASAS SNTVDIPTSG LKPAIPSVLV STPTPDVTAS WTTPTSAVGS LPSGFGLKPS NPSVSLLNPT PILSVPAIPS VSLLSSSHDK PVTASVPLSR
401: PVPGMPVTPS VSMLTHHTPA PDMHRPVSKN FHHVSSGMPP ALNNQSQQET AMASGPKRAN YYKNLIRQHG ADKQDIQDSH IGIRHSNFQD MKPVHNIKQR
501: EVKPKILKPC IYFKSPRGCR NGSNCSYQHD VSAQEGAGNV LRAQSAKRLK LGGEN

Best Arabidopsis Sequence Match ( AT5G66270.1 )
(BLAST)

001: MMKKTKKGRV SWASDSMLCQ VKLFLSDDCP VKVASNLPPG FEATDYATKR IISHIPRIKW KRPPLFVLDD ALLVGSGGKS IETRSENLRI SKVLEAFYPH
101: RSVIPSRPSL TLAVEEEHYD DGKTPNIPLT HVEDERDAAA ESSHSFEAPA AVSGLGPELS LLASAALSAL TKEQGSQVDP DLLVKLLSDP KIVENLINGM
201: KGKPLETANN SLNTDITEPR LAPQHVTSTT MDRNPPPMPG NVAPHNVPVS VQSSATDPPL PKPNQPMSSA LSMNLTLQKP TPVVHNYPLS SGIKVEDSYT
301: AAPLKPSTGD DVVVSEQKTQ LLFPCSSWNM NKVPESARTE TDPQIRNGNT NRDDQVSAKP VKDLDYFKNL IREHGAVKPA TTETNNYKGR VDHKKIVKVR
401: IQKPCMYFNR PKGCRMGESC LYLHDSSKRL WTDVAPPHFP RAKRLKFGS

Arabidopsis Description

Zinc finger CCCH domain-containing protein 68 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.