CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion, plasma membrane, plastid
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	32.82	47.49
KRH33201	Soybean	endoplasmic reticulum	50.97	46.48
Solyc04g016400.2.1	Tomato	cytosol	40.54	43.39
PGSC0003DMT400033117	Potato	cytosol	42.47	42.8
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	44.02	40.86
CDY56710	Canola	cytosol, extracellular, plastid	44.02	40.28
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	42.86	40.22
Os12t0137100-01	Rice	cytosol, nucleus, plastid	44.4	39.38
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	44.4	37.95
Zm00001d052458_P001	Maize	extracellular	42.86	37.5
EES09228	Sorghum	cytosol	43.24	36.84
Os11t0140600-01	Rice	cytosol	43.63	36.69
Bra034103.1-P	Field mustard	cytosol	44.79	36.36
CDY41334	Canola	cytosol	44.79	36.25
Solyc10g079890.1.1	Tomato	plastid	47.1	35.88
KRH26648	Soybean	cytosol, plastid	29.34	35.68
PGSC0003DMT400076703	Potato	cytosol, plastid	47.1	35.47
TraesCS5D01G142800.1	Wheat	nucleus	44.79	34.94
TraesCS5A01G136100.1	Wheat	nucleus	44.79	34.83
KRH22671	Soybean	cytosol, plastid	28.96	34.4
TraesCS4D01G127600.1	Wheat	cytosol	42.47	34.06
CDY67472	Canola	cytosol	39.38	34.0
TraesCS4B01G132800.1	Wheat	nucleus	42.86	33.84
TraesCS4A01G186100.1	Wheat	golgi	42.08	33.54
AT5G04170.1	Thale cress	cytosol	44.4	32.49
Bra009480.1-P	Field mustard	cytosol	44.02	31.23
CDX70254	Canola	cytosol	42.86	30.41
HORVU5Hr1G043650.2	Barley	plastid	42.47	28.57
CDX80907	Canola	cytosol	43.24	27.72
CDY41394	Canola	mitochondrion	42.86	27.48
HORVU4Hr1G026030.9	Barley	cytosol	32.43	25.69
Bra005797.1-P	Field mustard	cytosol	39.38	24.82
AT3G10300.6	Thale cress	cytosol	33.2	22.81

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	UniProt:A0A0R0L5Y8	EMBL:ACUP02001155	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS
InterPro:EF_hand_dom	EnsemblPlantsGene:GLYMA_02G186900	GO:GO:0003674	GO:GO:0003824	GO:GO:0004198	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016020	GO:GO:0016021	GO:GO:0016787	GO:GO:0019538
InterPro:IPR002048	EnsemblPlants:KRH72037	ProteinID:KRH72037	ProteinID:KRH72037.1	PFAM:PF00036	ScanProsite:PS00018
PFscan:PS50222	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	TMHMM:TMhelix
UniParc:UPI0006ED8F91	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:34352590..34356344

Molecular Weight (calculated)

28916.6 Da

IEP (calculated)

9.299

GRAVY (calculated)

-0.293

Length

259 amino acids

Sequence
(BLAST)

001: MSGYPNQPPS YGYGYGAPPP PHPYGAPQPP QSYGAPPPAQ PYSAAPYAQP SAPYNKPPKN ESHSHSGGSG GSTLYGGFIT STWPRKLLKI HETKHVKIYP
101: KFMLDSESIS ERQIKHALTW LLLLQSIFER FDKDRSGKID YTELRDALLS LGYAVSPVVL DLLVSKFDKT GGKSKAIEYD NFIEYGFSSI RSLFYLILQL
201: ILHLVILIFS YDVESQKNIN KRTILGLTDK FKEKDTAYSG SATFSYESFM LTVLPFLIA

Best Arabidopsis Sequence Match ( AT5G04170.1 )
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA

Arabidopsis Description

CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.