Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 1
- golgi 1
- extracellular 1
- plastid 2
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 37.01 | 73.18 |
| CDY67472 | Canola | cytosol | 58.19 | 68.67 |
| Bra009480.1-P | Field mustard | cytosol | 70.34 | 68.22 |
| VIT_00s0252g00130.t01 | Wine grape | cytosol, plasma membrane, plastid | 52.54 | 67.39 |
| CDX80907 | Canola | cytosol | 76.55 | 67.08 |
| Solyc04g016400.2.1 | Tomato | cytosol | 45.48 | 66.53 |
| GSMUA_Achr8P17120_001 | Banana | cytosol, plasma membrane, plastid | 51.98 | 65.95 |
| Os12t0137100-01 | Rice | cytosol, nucleus, plastid | 53.67 | 65.07 |
| EES09228 | Sorghum | cytosol | 55.65 | 64.8 |
| PGSC0003DMT400033117 | Potato | cytosol | 46.89 | 64.59 |
| Zm00001d052458_P001 | Maize | extracellular | 53.95 | 64.53 |
| Os11t0140600-01 | Rice | cytosol | 54.52 | 62.66 |
| TraesCS5B01G135100.1 | Wheat | cytosol, nucleus, plastid | 52.82 | 61.72 |
| CDX70254 | Canola | cytosol | 61.02 | 59.18 |
| Bra005797.1-P | Field mustard | cytosol | 68.08 | 58.64 |
| Solyc10g079890.1.1 | Tomato | plastid | 56.21 | 58.53 |
| PGSC0003DMT400076703 | Potato | cytosol, plastid | 56.21 | 57.85 |
| TraesCS5D01G142800.1 | Wheat | nucleus | 54.24 | 57.83 |
| TraesCS5A01G136100.1 | Wheat | nucleus | 53.95 | 57.36 |
| TraesCS4D01G127600.1 | Wheat | cytosol | 52.26 | 57.28 |
| TraesCS4B01G132800.1 | Wheat | nucleus | 52.82 | 57.01 |
| TraesCS4A01G186100.1 | Wheat | golgi | 51.98 | 56.62 |
| CDY41394 | Canola | mitochondrion | 61.86 | 54.21 |
| AT3G10300.6 | Thale cress | cytosol | 55.37 | 51.99 |
| HORVU4Hr1G026030.9 | Barley | cytosol | 44.92 | 48.62 |
| HORVU5Hr1G043650.2 | Barley | plastid | 51.69 | 47.53 |
| KRH72037 | Soybean | cytosol, plasma membrane, plastid | 32.49 | 44.4 |
| AT2G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 23.73 | 36.84 |
Protein Annotations
| Gene3D:1.10.238.10 | MapMan:35.1 | EntrezGene:830295 | ProteinID:AED90707.1 | ArrayExpress:AT5G04170 | EnsemblPlantsGene:AT5G04170 |
| RefSeq:AT5G04170 | TAIR:AT5G04170 | RefSeq:AT5G04170-TAIR-G | EnsemblPlants:AT5G04170.1 | TAIR:AT5G04170.1 | EMBL:AY081342 |
| Unigene:At.19699 | EMBL:BT008838 | ProteinID:CAC05499.1 | InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004198 | GO:GO:0005488 | GO:GO:0005509 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0046872 | InterPro:IPR002048 |
| RefSeq:NP_196037.2 | PFAM:PF13202 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00018 | PFscan:PS50222 | PANTHER:PTHR10183 | PANTHER:PTHR10183:SF372 |
| UniProt:Q9FYE4 | SMART:SM00054 | SUPFAM:SSF47473 | UniParc:UPI00000AB954 | SEG:seg | : |
Description
CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
Coordinates
chr5:+:1145431..1147781
Molecular Weight (calculated)
37114.7 Da
IEP (calculated)
6.927
GRAVY (calculated)
-0.558
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.