Factsheet for TraesCS5A01G136100.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	plastid

golgi: 25769308
nucleus: 26579155

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26579155 doi

T Bonnot, E Bancel, C Chambon, J Boudet, G Branlard, P Martre

Metabolism Exploration Platform Proteomic Component, Institut National de la Recherche Agronomique Saint-Genès Champanelle, France., UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Institut National de la Recherche Agronomique Clermont-Ferrand, France ; UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Blaise Pascal University Aubière, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G142800.1	Wheat	nucleus	99.1	99.4
Os12t0137100-01	Rice	cytosol, nucleus, plastid	71.77	81.85
Os11t0140600-01	Rice	cytosol	72.67	78.57
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	69.67	76.57
GSMUA_AchrUn_...	Banana	cytosol	39.04	72.63
Zm00001d052458_P001	Maize	extracellular	60.36	67.91
EES09228	Sorghum	cytosol	61.56	67.43
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	56.16	67.03
Solyc04g016400.2.1	Tomato	cytosol	48.65	66.94
CDY56710	Canola	cytosol, extracellular, plastid	56.76	66.78
KRH33201	Soybean	endoplasmic reticulum	56.76	66.55
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	53.75	64.86
PGSC0003DMT400033117	Potato	cytosol	49.55	64.2
TraesCS4A01G186100.1	Wheat	golgi	62.46	64.0
Bra034103.1-P	Field mustard	cytosol	57.36	59.87
CDY41334	Canola	cytosol	57.36	59.69
CDY67472	Canola	cytosol	52.55	58.33
Solyc10g079890.1.1	Tomato	plastid	57.66	56.47
PGSC0003DMT400076703	Potato	cytosol, plastid	57.66	55.81
AT5G04170.1	Thale cress	cytosol	57.36	53.95
HORVU5Hr1G043650.2	Barley	plastid	61.86	53.51
CDX70254	Canola	cytosol	54.95	50.14
Bra009480.1-P	Field mustard	cytosol	53.15	48.49
AT3G10300.6	Thale cress	cytosol	51.05	45.09
CDY41394	Canola	mitochondrion	54.65	45.05
CDX80907	Canola	cytosol	54.35	44.8
KRH72037	Soybean	cytosol, plasma membrane, plastid	34.83	44.79
TraesCS7A01G134000.1	Wheat	cytosol	33.33	43.19
Bra005797.1-P	Field mustard	cytosol	51.65	41.85

Protein Annotations

EnsemblPlants:TraesCS5A01G136100.1	EnsemblPlantsGene:TraesCS5A01G136100	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10183	PANTHER:PTHR10183:SF372
PFAM:PF13202	PFAM:PF13405	PFscan:PS50222	ScanProsite:PS00018	SEG:seg	SMART:SM00054
SUPFAM:SSF47473	TIGR:cd16180	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5A:+:307346307..307349314

Molecular Weight (calculated)

34147.5 Da

IEP (calculated)

5.334

GRAVY (calculated)

-0.377

Length

333 amino acids

Sequence
(BLAST)

001: MSGYPYGGAA GGGGGYGAPP PYGSSPAPSA PPYGDKPPKE GKASSPYYAS PPQTYGASGG GGGYGAPPSS QPQSYGGGYG APPSSQPQSY GGGGYGAPPA
101: GQPQSYGGGG GYGAPPAGQS YGAPPPSSAP YGAPPPAAAP YGAAGGYGSP FAALVPSAFP PGTDPNVVAC FQAADRDGSG TIDDKELQSA LSGYNQSFSL
201: RTVHLLMYLF TNTNVRRIGP KEFTSVFYSL QNWRSIFERF DRDRSGKIDA SELRDALLSL GYSVSPTVLD LLVSKFDKTG GMSKAVEYDN FIECCLTVKG
301: LTEKFKEKDT AYSGSATFSY EAFMLTVLPF IIA

Best Arabidopsis Sequence Match ( AT3G10300.3 )
(BLAST)

001: MSGYPPSSQG YGYGGNPPPP QPPYGSTGNN PPPYGSSGSN PPPPYGSSAS SPYAVPYGAQ PAPYGAPPSA PYASLPGDHN KPHKEKPHGA SYGSPSPGGY
101: GAHPSSGPSD YGGYGGAPQQ SGHGGGYGGA PQQSGHGGGY GAPPPQASYG SPFASLVPSA FPPGTDPNIV ACFQAADRDN SGFIDDKELQ GALSSYNQSF
201: SIRTVHLLMY LFTNSNVRKI GPKEFTSLFF SLQNWRSIFE RFDKDRSGRI DTNELRDALM SLGFSVSPVI LDLLVSKFDK SGGRNRAIEY DNFIECCLTV
301: KGLTEKFKEK DTALSGSAIF NYENFMLTVL PFLVA

Arabidopsis Description

Calcium-binding EF-hand family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRS6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.