CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
plastid 2
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41394	Canola	mitochondrion	87.4	78.96
GSMUA_AchrUn_...	Banana	cytosol	35.34	72.07
Solyc04g016400.2.1	Tomato	cytosol	46.03	69.42
CDY56710	Canola	cytosol, extracellular, plastid	53.15	68.55
CDY67472	Canola	cytosol	55.07	67.0
PGSC0003DMT400033117	Potato	cytosol	46.3	65.76
Os12t0137100-01	Rice	cytosol, nucleus, plastid	52.33	65.41
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	49.32	65.22
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	49.32	64.52
Zm00001d052458_P001	Maize	extracellular	51.78	63.85
Bra009480.1-P	Field mustard	cytosol	63.84	63.84
EES09228	Sorghum	cytosol	52.88	63.49
CDY41334	Canola	cytosol	55.34	63.12
Os11t0140600-01	Rice	cytosol	52.05	61.69
AT5G04170.1	Thale cress	cytosol	59.18	61.02
TraesCS5B01G135100.1	Wheat	cytosol, nucleus, plastid	49.86	60.07
TraesCS4B01G132800.1	Wheat	nucleus	52.33	58.23
TraesCS4D01G127600.1	Wheat	cytosol	51.23	57.89
TraesCS4A01G186100.1	Wheat	golgi	51.51	57.85
Solyc10g079890.1.1	Tomato	plastid	52.88	56.76
PGSC0003DMT400076703	Potato	cytosol, plastid	52.88	56.1
TraesCS5D01G142800.1	Wheat	nucleus	50.14	55.12
TraesCS5A01G136100.1	Wheat	nucleus	50.14	54.95
CDX80907	Canola	cytosol	60.0	54.21
HORVU4Hr1G026030.9	Barley	cytosol	44.11	49.24
HORVU5Hr1G043650.2	Barley	plastid	49.86	47.27
KRH72037	Soybean	cytosol, plasma membrane, plastid	30.41	42.86
CDX83268	Canola	cytosol	23.29	38.12
CDY31179	Canola	cytosol	22.74	37.22

Protein Annotations

Gene3D:1.10.238.10	MapMan:35.1	GO:A0A078C1V9	EnsemblPlants:CDX70254	ProteinID:CDX70254	ProteinID:CDX70254.1
InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005509
EnsemblPlantsGene:GSBRNA2T00136392001	InterPro:IPR002048	PFAM:PF13202	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10183
PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EF0A21	SEG:seg	:

Description

BnaA10g26030D

Coordinates

chrLK031790:-:3792605..3794552

Molecular Weight (calculated)

38010.9 Da

IEP (calculated)

6.527

GRAVY (calculated)

-0.513

Length

365 amino acids

Sequence
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS STGNNPPTSQ GYGYGGGNNP PYGSSSPYAV PYGASKPQSS SAPSAPPYAP SPPPGDFNPP KEKPFGGGYG
101: ASPPSGPYGS AAAPRPGGYG AAPPHSEYGG YGAAPRPYGG YGAAAPPSGV PEYGGYGGAP PRPGGGGYGG YPSPQGSSYG SPFASLVPSG FAPGTDPNIV
201: ACFQAADQDG SGFIDDKELQ GALSSYQQRF SMRTVHLLMY LFTNTNAMKI GPKEFTALFY SLQNWRSIFE RSDKDRSGRI DVSELRDALL SLGFSVSPVI
301: LDLLVSKFDK SGGKNRAIEY DNFIECCLTV KGLTEKFKEK DTGYSGSATF TYESFMLTVL PFLIA

Best Arabidopsis Sequence Match ( AT5G04170.1 )
(BLAST)

001: MSGYPPTSQG YGYGYGGGNQ PPPPQPPYSS GGNNPPYGSS TTSSPYAVPY GASKPQSSSS SAPTYGSSSY GAPPPSAPYA PSPGDYNKPP KEKPYGGGYG
101: APPPSGSSDY GSYGAGPRPS QPSGHGGGYG ATPPHGVSDY GSYGGAPPRP ASSGHGGGYG GYPPQASYGS PFASLIPSGF APGTDPNIVA CFQAADQDGS
201: GFIDDKELQG ALSSYQQRFS MRTVHLLMYL FTNSNAMKIG PKEFTALFYS LQNWRSIFER SDKDRSGRID VNELRDALLS LGFSVSPVVL DLLVSKFDKS
301: GGKNRAIEYD NFIECCLTVK GLTEKFKEKD TAYSGSATFN YESFMLTVLP FLIA

Arabidopsis Description

CML50Probable calcium-binding protein CML50 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.