CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDY16530
CDY32838

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27480.1	CDY16530	AT1G49840.1	21798944
AT2G27480.1	CDY32838	AT1G49840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83268	Canola	cytosol	94.17	94.17
AT2G27480.1	Thale cress	cytosol, nucleus, peroxisome	73.99	72.37
KRH26648	Soybean	cytosol, plastid	51.12	53.52
KRH22671	Soybean	cytosol, plastid	50.22	51.38
VIT_06s0080g00450.t01	Wine grape	plastid	48.43	48.0
Solyc11g068460.1.1	Tomato	cytosol, plastid	47.53	42.57
GSMUA_Achr3P22660_001	Banana	plastid	44.39	41.95
Os08t0558100-01	Rice	cytosol	46.19	40.71
Zm00001d049940_P002	Maize	cytosol	44.84	38.91
TraesCS7D01G133400.1	Wheat	cytosol	44.84	38.61
TraesCS7A01G134000.1	Wheat	cytosol	44.39	38.52
EES14088	Sorghum	cytosol	45.29	37.41
HORVU7Hr1G027810.6	Barley	cytosol	45.29	37.27
TraesCS7B01G035100.1	Wheat	cytosol	42.6	35.06
PGSC0003DMT400067730	Potato	cytosol, plastid	38.56	29.66
CDY56710	Canola	cytosol, extracellular, plastid	36.77	28.98
CDY67472	Canola	cytosol	35.87	26.67
CDY41334	Canola	cytosol	36.77	25.62
CDX70254	Canola	cytosol	37.22	22.74
CDX80907	Canola	cytosol	37.67	20.79
CDY41394	Canola	mitochondrion	37.22	20.54

Protein Annotations

EnsemblPlants:CDY31179	EnsemblPlantsGene:GSBRNA2T00047286001	Gene3D:1.10.238.10	GO:A0A078H165	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10183
PANTHER:PTHR10183:SF372	PFscan:PS50222	ProteinID:CDY31179	ProteinID:CDY31179.1	ScanProsite:PS00018	SEG:seg
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0004EEE0F6	UniProt:A0A078H165	MapMan:35.1	:

Description

BnaC03g47120DBnaC03g47120D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H165]

Coordinates

chrLK032268:+:154142..155298

Molecular Weight (calculated)

25282.8 Da

IEP (calculated)

4.535

GRAVY (calculated)

-0.317

Length

223 amino acids

Sequence
(BLAST)

001: MAYAPSAPEL PESFGQQLDE EARYTYAYPY GRPTNQLGSS GMFSPETHPD IVRSFESAGG NRSGFLDESE LRHALSFSGY EGISNRTIRF LLFIYKSPAE
101: SLLRLGPKEY AELWNCLAQW RAMFDRYDSD RSGKMNPLEL RDAFYHLGYM LPSSVLQLII LSQLDDGTGN TVDLCFDRFL ECGMIVKSLT EKFKEKDPGY
201: TGYATLSYDA FMSMVIPFIA SYD

Best Arabidopsis Sequence Match ( AT2G27480.1 )
(BLAST)

001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD

Arabidopsis Description

CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.