Factsheet for GSMUA_Achr3P22660_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
plastid 3
cytosol 1
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P13470_001
GSMUA_Achr2P21540_001
GSMUA_Achr3P02230_001
GSMUA_Achr4P14230_001
GSMUA_Achr4P32590_001
GSMUA_Achr6P16820_001
GSMUA_Achr6P24020_001
GSMUA_Achr7P00620_001
GSMUA_Achr7P26350_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27480.1	GSMUA_Achr10P...	AT1G49840.1	21798944
AT2G27480.1	GSMUA_Achr10P...	AT1G49840.1	21798944
AT2G27480.1	GSMUA_Achr2P13470_001	AT1G49840.1	21798944
AT2G27480.1	GSMUA_Achr2P21540_001	AT1G49840.1	21798944
AT2G27480.1	GSMUA_Achr3P02230_001	AT1G49840.1	21798944
AT2G27480.1	GSMUA_Achr4P14230_001	AT1G49840.1	21798944
AT2G27480.1	GSMUA_Achr4P32590_001	AT1G49840.1	21798944
AT2G27480.1	GSMUA_Achr6P16820_001	AT1G49840.1	21798944
AT2G27480.1	GSMUA_Achr6P24020_001	AT1G49840.1	21798944
AT2G27480.1	GSMUA_Achr7P00620_001	AT1G49840.1	21798944
AT2G27480.1	GSMUA_Achr7P26350_001	AT1G49840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0080g00450.t01	Wine grape	plastid	63.56	66.67
KRH26648	Soybean	cytosol, plastid	53.39	59.15
KRH22671	Soybean	cytosol, plastid	53.81	58.26
Os08t0558100-01	Rice	cytosol	60.59	56.52
TraesCS7A01G134000.1	Wheat	cytosol	60.17	55.25
Solyc11g068460.1.1	Tomato	cytosol, plastid	58.05	55.02
Zm00001d049940_P002	Maize	cytosol	58.9	54.09
EES14088	Sorghum	cytosol	61.44	53.7
TraesCS7D01G133400.1	Wheat	cytosol	58.9	53.67
TraesCS7B01G035100.1	Wheat	cytosol	60.59	52.77
HORVU7Hr1G027810.6	Barley	cytosol	55.51	48.34
AT2G27480.1	Thale cress	cytosol, nucleus, peroxisome	44.92	46.49
GSMUA_AchrUn_...	Banana	cytosol	35.17	46.37
CDY31179	Canola	cytosol	41.95	44.39
CDX83268	Canola	cytosol	41.95	44.39
Bra000510.1-P	Field mustard	cytosol	41.53	43.95
PGSC0003DMT400067730	Potato	cytosol, plastid	52.12	42.41
GSMUA_Achr8P17120_001	Banana	cytosol, plasma membrane, plastid	48.31	40.86

Protein Annotations

EnsemblPlants:GSMUA_Achr3P22660_001	EnsemblPlants:GSMUA_Achr3T22660_001	EnsemblPlantsGene:GSMUA_Achr3G22660_001	Gene3D:1.10.238.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005509	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom	InterPro:IPR002048	PANTHER:PTHR10183
PANTHER:PTHR10183:SF372	PFAM:PF13202	PFAM:PF13405	PFscan:PS50222	ScanProsite:PS00018	SEG:seg
SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI0002955B07	UniProt:M0SGY2	MapMan:35.1	:

Description

Probable calcium-binding protein CML48 [Source:GMGC_GENE;Acc:GSMUA_Achr3G22660_001]

Coordinates

chr3:+:23555339..23558309

Molecular Weight (calculated)

26008.8 Da

IEP (calculated)

6.265

GRAVY (calculated)

-0.246

Length

236 amino acids

Sequence
(BLAST)

001: MANYSGYPAP NYAPSAPPMP DSYSAGRPPT EGYAHPPPPR SYSHPYPSPW ASGAGGAGGS YFPPGTPPEV IRSFQAVDRD QSGFIEESEL QAALSSAYHK
101: FSIRTVRLLM FLFKNPSNPS KMGPVEFAAL WGCLGQWQAI FYRFDRDRSG KIDSVELKDA LISLGYAVPP SVIQVLISNY TDVYGRGALN FDNFVECGMI
201: VKGLTEKFKE RDTRYTGSAT FSYDDFLLMI IPFIVP

Best Arabidopsis Sequence Match ( AT2G27480.1 )
(BLAST)

001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD

Arabidopsis Description

CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.