Factsheet for VIT_06s0080g00450.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0091g00410.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27480.1	VIT_03s0091g00410.t01	AT1G49840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH26648	Soybean	cytosol, plastid	64.0	67.61
KRH22671	Soybean	cytosol, plastid	64.0	66.06
GSMUA_Achr3P22660_001	Banana	plastid	66.67	63.56
Solyc11g068460.1.1	Tomato	cytosol, plastid	66.67	60.24
Os08t0558100-01	Rice	cytosol	56.89	50.59
Zm00001d049940_P002	Maize	cytosol	57.78	50.58
CDX83268	Canola	cytosol	48.44	48.88
TraesCS7A01G134000.1	Wheat	cytosol	55.56	48.64
EES14088	Sorghum	cytosol	58.22	48.52
CDY31179	Canola	cytosol	48.0	48.43
Bra000510.1-P	Field mustard	cytosol	47.56	47.98
TraesCS7D01G133400.1	Wheat	cytosol	55.11	47.88
AT2G27480.1	Thale cress	cytosol, nucleus, peroxisome	47.56	46.93
TraesCS7B01G035100.1	Wheat	cytosol	56.0	46.49
HORVU7Hr1G027810.6	Barley	cytosol	55.56	46.13
PGSC0003DMT400067730	Potato	cytosol, plastid	58.67	45.52
VIT_00s0252g00130.t01	Wine grape	cytosol, plasma membrane, plastid	48.0	39.13

Protein Annotations

Gene3D:1.10.238.10	EntrezGene:100251852	wikigene:100251852	MapMan:35.1	EMBL:AM441512	ProteinID:CAN80623
ProteinID:CAN80623.1	ProteinID:CCB51655	ProteinID:CCB51655.1	InterPro:EF-hand-dom_pair	InterPro:EF_Hand_1_Ca_BS	InterPro:EF_hand_dom
UniProt:F6HHF9	EMBL:FN595757	GO:GO:0003674	GO:GO:0003824	GO:GO:0004198	GO:GO:0005488
GO:GO:0005509	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0019538	InterPro:IPR002048	EntrezGene:LOC100251852
wikigene:LOC100251852	PFAM:PF00036	PFAM:PF13202	ScanProsite:PS00018	PFscan:PS50222	PANTHER:PTHR10183
PANTHER:PTHR10183:SF372	SMART:SM00054	SUPFAM:SSF47473	UniParc:UPI00015CBE0E	ArrayExpress:VIT_06s0080g00450	EnsemblPlantsGene:VIT_06s0080g00450
EnsemblPlants:VIT_06s0080g00450.t01	RefSeq:XP_002275521	RefSeq:XP_002275521.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr6:-:20420103..20422823

Molecular Weight (calculated)

25280.9 Da

IEP (calculated)

7.657

GRAVY (calculated)

-0.394

Length

225 amino acids

Sequence
(BLAST)

001: MASFSGYNPQ SHSPSPSAPP MPNPQAPSSS QPHYSQPPHW HGSSYGHSSF PPGTHPDVIR SFQMVDRDRS GYIDEIELQQ ALSSGYQRFS LRTIRLLMFL
101: FKNPSSPLGI GPNEFAALWS CLGQWRAIFE RFDRDRSGKI DSMELKDALY SLGYAVPPSV LQVLISKYDD RSGRRVELNF DSFVECGMIV KGLTEKFKEK
201: DPRYTGSATL TYDAFLSMII PFLVA

Best Arabidopsis Sequence Match ( AT2G27480.1 )
(BLAST)

001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD

Arabidopsis Description

CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.