Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G133400.1 | Wheat | cytosol | 80.16 | 79.54 |
| TraesCS7B01G035100.1 | Wheat | cytosol | 82.1 | 77.86 |
| Os08t0558100-01 | Rice | cytosol | 68.87 | 69.96 |
| Zm00001d049940_P002 | Maize | cytosol | 64.2 | 64.2 |
| HORVU7Hr1G027810.6 | Barley | cytosol | 66.93 | 63.47 |
| EES14088 | Sorghum | cytosol | 65.76 | 62.59 |
| GSMUA_Achr3P22660_001 | Banana | plastid | 55.25 | 60.17 |
| VIT_06s0080g00450.t01 | Wine grape | plastid | 48.64 | 55.56 |
| KRH22671 | Soybean | cytosol, plastid | 46.3 | 54.59 |
| KRH26648 | Soybean | cytosol, plastid | 44.75 | 53.99 |
| Solyc11g068460.1.1 | Tomato | cytosol, plastid | 48.25 | 49.8 |
| CDX83268 | Canola | cytosol | 39.3 | 45.29 |
| AT2G27480.1 | Thale cress | cytosol, nucleus, peroxisome | 40.08 | 45.18 |
| CDY31179 | Canola | cytosol | 38.52 | 44.39 |
| Bra000510.1-P | Field mustard | cytosol | 38.52 | 44.39 |
| PGSC0003DMT400067730 | Potato | cytosol, plastid | 41.63 | 36.9 |
| TraesCS4A01G186100.1 | Wheat | golgi | 43.19 | 34.15 |
| TraesCS5A01G136100.1 | Wheat | nucleus | 43.19 | 33.33 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G134000.1 | EnsemblPlantsGene:TraesCS7A01G134000 | Gene3D:1.10.238.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005509 |
| InterPro:EF-hand-dom_pair | InterPro:EF_Hand_1_Ca_BS | InterPro:EF_hand_dom | InterPro:IPR002048 | PANTHER:PTHR10183 | PANTHER:PTHR10183:SF372 |
| PFAM:PF13405 | PFscan:PS50222 | ScanProsite:PS00018 | SEG:seg | SMART:SM00054 | SUPFAM:SSF47473 |
| TIGR:cd16180 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:85901499..85903086
Molecular Weight (calculated)
27872.4 Da
IEP (calculated)
6.014
GRAVY (calculated)
-0.423
Length
257 amino acids
Sequence
(BLAST)
(BLAST)
001: MADYNRYGHG HDQGYGQGYG YAPSAPPAPT SSPYGNGQGY SQGYAPTPSS SSSSPYGYGY GQGGYPPPMG GFGGAVAFPP GTHPDVERAF RAVDRDGSGS
101: IDEGELQAAL SDAHRRFSIR TVRLLIFLFS NAQLASSPRS RMGPTEFVTL WNCLGQWRVV FDRYDRDRSG KIDSDELREA LRSLGYAVPP SVIDLLIANY
201: NNGVSHRGAL DFDNFVECGM VVKGLTEKFK ENDTRYTGSA ALTYDGFLSM VIPFIVP
101: IDEGELQAAL SDAHRRFSIR TVRLLIFLFS NAQLASSPRS RMGPTEFVTL WNCLGQWRVV FDRYDRDRSG KIDSDELREA LRSLGYAVPP SVIDLLIANY
201: NNGVSHRGAL DFDNFVECGM VVKGLTEKFK ENDTRYTGSA ALTYDGFLSM VIPFIVP
001: MSYSNAYAPS APELPESFVQ QQHDGESRYT YAYPSYQPTQ QFSSYSGMFS PETHPEIVRS FESADRNRSG FLEESELRQA LSLSGYDGIS NRTIRLLLFI
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD
101: YKIPVDSLLR LGPKEYVELW NCLAQWRAIF NRYDRDRSGK MNSTQLRDAF YNLGCVLPTS VHQLIVSQFD DGTGKTVDLC FDSFLECGMI VKGLTEKFRE
201: NDPGYTGYAT LSYDVFMLMV IPFIATYD
Arabidopsis Description
CML48Probable calcium-binding protein CML48 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZQH1]
SUBAcon: [peroxisome,nucleus,cytosol]
SUBAcon: [peroxisome,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.