Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G072300.1 | Wheat | cytosol | 99.14 | 99.14 |
| TraesCS5B01G078600.2 | Wheat | cytosol | 91.58 | 98.6 |
| HORVU5Hr1G018870.3 | Barley | cytosol, mitochondrion | 97.41 | 98.04 |
| Os12t0581300-01 | Rice | cytosol | 32.18 | 94.3 |
| OQU79433 | Sorghum | cytosol | 86.61 | 89.31 |
| TraesCS4D01G076200.1 | Wheat | cytosol, mitochondrion | 82.29 | 83.37 |
| Zm00001d030837_P001 | Maize | cytosol, mitochondrion | 82.29 | 79.71 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 71.92 | 70.11 |
| KRG91072 | Soybean | plastid | 68.9 | 68.9 |
| KRH35700 | Soybean | plastid | 68.68 | 68.83 |
| GSMUA_Achr7P00620_001 | Banana | mitochondrion | 60.26 | 68.55 |
| PGSC0003DMT400066530 | Potato | plastid | 69.55 | 68.51 |
| Solyc01g107350.2.1 | Tomato | plastid | 69.11 | 68.09 |
| CDY50147 | Canola | mitochondrion | 63.5 | 66.97 |
| CDX95439 | Canola | mitochondrion | 62.85 | 66.9 |
| VIT_18s0001g09450.t01 | Wine grape | plastid | 67.17 | 66.31 |
| PGSC0003DMT400055468 | Potato | plastid | 66.09 | 65.11 |
| KRH15430 | Soybean | plastid | 66.09 | 64.69 |
| CDY67693 | Canola | mitochondrion | 62.85 | 64.1 |
| KRH05611 | Soybean | plastid | 65.87 | 64.08 |
| Bra038214.1-P | Field mustard | mitochondrion, plastid | 63.07 | 63.62 |
| CDY46168 | Canola | mitochondrion | 62.63 | 63.6 |
| Bra022430.1-P | Field mustard | mitochondrion, plastid | 63.71 | 62.9 |
| AT3G19540.1 | Thale cress | plastid | 65.66 | 62.68 |
| TraesCS2D01G192800.1 | Wheat | nucleus | 67.82 | 62.06 |
| CDY16530 | Canola | plastid | 59.4 | 60.84 |
| CDY32838 | Canola | plastid | 58.96 | 60.0 |
| AT1G49840.1 | Thale cress | plastid | 61.77 | 57.89 |
| AT1G27690.1 | Thale cress | plastid | 54.0 | 57.74 |
| Bra014219.1-P | Field mustard | plastid | 60.26 | 57.17 |
| Solyc04g078190.2.1 | Tomato | nucleus, plastid | 36.07 | 57.0 |
| CDY03939 | Canola | cytosol | 14.25 | 55.93 |
| CDY67976 | Canola | mitochondrion, plastid | 53.13 | 48.52 |
| CDX90103 | Canola | mitochondrion, plastid | 52.92 | 48.32 |
| Bra010924.1-P | Field mustard | mitochondrion, plastid | 54.86 | 47.57 |
| TraesCS4D01G281900.1 | Wheat | cytosol | 37.15 | 47.12 |
| TraesCS4D01G211900.1 | Wheat | cytosol, nucleus, plastid | 41.25 | 42.44 |
| TraesCS3D01G299300.1 | Wheat | cytosol | 34.56 | 41.67 |
| TraesCS1D01G131900.1 | Wheat | cytosol | 37.15 | 37.8 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G085100.1 | EnsemblPlantsGene:TraesCS5D01G085100 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF20 | PFAM:PF04788 |
| SEG:seg | MapMan:27.4.5.3 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:+:89379998..89382026
Molecular Weight (calculated)
49620.6 Da
IEP (calculated)
8.829
GRAVY (calculated)
-0.191
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKKQGFFSA LREEVARGLS PARARRRAEE VAAAKAALRY AGGGGGEALA PLMEGPDPEE AGGGEGAGRA RRDGWGRWVR GQLARAPSSG PVASAGGAGA
101: ARRNDLRMLL GVMGAALAPV HVCAAEPLPH LSIKDTPIET SSAQYILQQY LAASGGQKLL SSIRNSYAMG KVRMVATECE TAGRVVRNRM AARCAEPGRF
201: VLWQMAPEMW YIELAVGGSK VHAGCNGKLV WRHTPWLGAH SAKGPVRPLR RSLQGLDPLT TASMFAGARC IGERKVNGDD CFILKLCADP ETLRARSEGL
301: AEIIRHVLFG YFSQKTGLLV HLEDSHLTRI QSTTGGDAVY WETTINSFIE DYRPVEGIMI AHAGRSAVTL FRFGEVAMSH TKTRMEEAWS IEEVAFNVPG
401: LSMDCFIPPT DIKSGSISET VELPQSGKSK AGGLLPCHGA KVAALEKADD NVAWSGALQR DCK
101: ARRNDLRMLL GVMGAALAPV HVCAAEPLPH LSIKDTPIET SSAQYILQQY LAASGGQKLL SSIRNSYAMG KVRMVATECE TAGRVVRNRM AARCAEPGRF
201: VLWQMAPEMW YIELAVGGSK VHAGCNGKLV WRHTPWLGAH SAKGPVRPLR RSLQGLDPLT TASMFAGARC IGERKVNGDD CFILKLCADP ETLRARSEGL
301: AEIIRHVLFG YFSQKTGLLV HLEDSHLTRI QSTTGGDAVY WETTINSFIE DYRPVEGIMI AHAGRSAVTL FRFGEVAMSH TKTRMEEAWS IEEVAFNVPG
401: LSMDCFIPPT DIKSGSISET VELPQSGKSK AGGLLPCHGA KVAALEKADD NVAWSGALQR DCK
001: MDKKHGLFSK SNSRRPRSKS PVRSVSPIII RRRKGRYVTQ PDRHMSEMLA PVIEGPDPDA EDSGSSGDYS RFERRWYNWM KCQLPVAPPS VSSSSDFKRT
101: DLRLLLGVLG APLGPVHVSA LDLLPHLSIK NTPMETSSAQ YILQQYTAAS GGQKLHSSVQ NGYVMGRIRT MASEFETGSK GSKSKNNSSK AVESGGFVLW
201: HMNPDMWYME LVLGGSKVLA GCDGKLVWRH TPWLGPHAAK GPVRPLRRAL QGLDPRTTAY MFANARCIGE KKIDGEDCFI LKLCADPATL KARSEGASET
301: IRHTLFGYFS QKTGLLVHLE DSQLTRIQNN GGEAVYWETT INSYLEDYKP VEGIMIAHSG RSVATLLRFG DMSSGHNTKT TMQEAWVIDE ISFNVPGLSI
401: DCFIPPSELR FDSHVEDLSQ GPKIRTLHGH KNG
101: DLRLLLGVLG APLGPVHVSA LDLLPHLSIK NTPMETSSAQ YILQQYTAAS GGQKLHSSVQ NGYVMGRIRT MASEFETGSK GSKSKNNSSK AVESGGFVLW
201: HMNPDMWYME LVLGGSKVLA GCDGKLVWRH TPWLGPHAAK GPVRPLRRAL QGLDPRTTAY MFANARCIGE KKIDGEDCFI LKLCADPATL KARSEGASET
301: IRHTLFGYFS QKTGLLVHLE DSQLTRIQNN GGEAVYWETT INSYLEDYKP VEGIMIAHSG RSVATLLRFG DMSSGHNTKT TMQEAWVIDE ISFNVPGLSI
401: DCFIPPSELR FDSHVEDLSQ GPKIRTLHGH KNG
Arabidopsis Description
Lipase, putative (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q8RWY0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.