Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 1
- cytoskeleton 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY01311 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G49840.1 | CDY01311 | AT1G21840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY16530 | Canola | plastid | 95.6 | 96.24 |
| AT1G49840.1 | Thale cress | plastid | 83.3 | 76.72 |
| CDY50147 | Canola | mitochondrion | 72.31 | 74.94 |
| CDX95439 | Canola | mitochondrion | 71.21 | 74.48 |
| CDY67693 | Canola | mitochondrion | 72.09 | 72.25 |
| CDY46168 | Canola | mitochondrion | 72.31 | 72.15 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 71.43 | 68.42 |
| KRG91072 | Soybean | plastid | 69.23 | 68.03 |
| KRH35700 | Soybean | plastid | 69.01 | 67.97 |
| PGSC0003DMT400066530 | Potato | plastid | 70.11 | 67.87 |
| Solyc01g107350.2.1 | Tomato | plastid | 69.89 | 67.66 |
| Os12t0581300-01 | Rice | cytosol | 22.64 | 65.19 |
| GSMUA_Achr3P02230_001 | Banana | cytosol, plastid | 43.52 | 64.5 |
| GSMUA_Achr4P32590_001 | Banana | cytosol | 63.74 | 64.16 |
| GSMUA_Achr4P14230_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 63.52 | 63.1 |
| GSMUA_Achr6P16820_001 | Banana | cytosol | 60.88 | 62.81 |
| Os03t0606100-01 | Rice | cytosol | 59.12 | 61.14 |
| OQU79433 | Sorghum | cytosol | 60.22 | 61.02 |
| GSMUA_Achr10P... | Banana | cytosol | 52.09 | 60.93 |
| GSMUA_Achr6P24020_001 | Banana | cytosol | 53.63 | 60.85 |
| GSMUA_Achr10P... | Banana | plastid | 55.82 | 60.62 |
| TraesCS4D01G076200.1 | Wheat | cytosol, mitochondrion | 60.88 | 60.61 |
| TraesCS4A01G237300.1 | Wheat | cytosol, mitochondrion | 60.66 | 60.39 |
| TraesCS4B01G077800.1 | Wheat | cytosol | 60.66 | 60.39 |
| HORVU5Hr1G018870.3 | Barley | cytosol, mitochondrion | 60.44 | 59.78 |
| TraesCS5B01G078600.2 | Wheat | cytosol | 56.48 | 59.77 |
| TraesCS5D01G085100.1 | Wheat | cytosol | 60.0 | 58.96 |
| TraesCS5A01G072300.1 | Wheat | cytosol | 60.0 | 58.96 |
| GSMUA_Achr2P21540_001 | Banana | plastid | 56.04 | 58.35 |
| EER91248 | Sorghum | cytosol | 59.34 | 57.82 |
| GSMUA_Achr7P26350_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 60.88 | 57.71 |
| GSMUA_Achr7P00620_001 | Banana | mitochondrion | 51.43 | 57.49 |
| TraesCS2D01G192800.1 | Wheat | nucleus | 63.52 | 57.11 |
| TraesCS2B01G211900.1 | Wheat | nucleus | 63.52 | 56.78 |
| TraesCS2A01G194900.1 | Wheat | nucleus | 63.3 | 56.69 |
| Zm00001d013746_P001 | Maize | cytosol | 57.58 | 56.59 |
| GSMUA_Achr2P13470_001 | Banana | cytosol | 54.51 | 56.49 |
| Os07t0591100-01 | Rice | nucleus | 63.96 | 56.18 |
| Zm00001d030837_P001 | Maize | cytosol, mitochondrion | 58.68 | 55.86 |
| OQU92347 | Sorghum | mitochondrion, plastid | 59.34 | 55.44 |
| EER99634 | Sorghum | nucleus | 63.3 | 55.17 |
| CDY03939 | Canola | cytosol | 14.29 | 55.08 |
| Zm00001d047324_P001 | Maize | cytosol | 58.9 | 54.69 |
| Zm00001d016585_P002 | Maize | extracellular, plasma membrane | 29.67 | 53.36 |
| Zm00001d006749_P001 | Maize | cytosol | 61.32 | 53.04 |
| Zm00001d022006_P001 | Maize | cytosol, plastid | 63.08 | 51.53 |
| HORVU4Hr1G013190.8 | Barley | mitochondrion | 56.7 | 51.09 |
| CDY67976 | Canola | mitochondrion, plastid | 52.09 | 46.75 |
| CDX90103 | Canola | mitochondrion, plastid | 51.87 | 46.55 |
| CDY68684 | Canola | cytosol, mitochondrion | 27.47 | 43.71 |
| CDY30758 | Canola | cytosol | 34.51 | 42.55 |
| CDY53851 | Canola | cytosol | 34.51 | 42.55 |
| CDX88540 | Canola | mitochondrion | 38.9 | 42.45 |
| CDX87382 | Canola | mitochondrion | 38.9 | 42.45 |
| CDY52160 | Canola | cytosol | 34.07 | 42.01 |
| CDX79318 | Canola | cytosol | 7.91 | 41.86 |
| CDY49838 | Canola | cytosol | 33.85 | 41.73 |
| CDX81011 | Canola | cytosol | 32.97 | 40.76 |
| CDY55767 | Canola | cytosol | 32.97 | 40.76 |
| CDY27272 | Canola | cytosol, nucleus, plastid | 37.14 | 38.94 |
| CDX70123 | Canola | cytosol | 37.36 | 38.37 |
| CDY02955 | Canola | cytosol, nucleus, plastid | 34.07 | 38.37 |
| CDX98870 | Canola | cytosol | 37.36 | 38.29 |
| CDX76076 | Canola | cytosol, nucleus, plastid | 33.63 | 37.87 |
| CDX68146 | Canola | cytosol | 30.77 | 37.04 |
| CDY37259 | Canola | cytosol | 32.09 | 36.87 |
| CDY46011 | Canola | cytosol | 32.09 | 36.87 |
Protein Annotations
| EnsemblPlants:CDY32838 | EnsemblPlantsGene:GSBRNA2T00052937001 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF1 | PFAM:PF04788 |
| ProteinID:CDY32838 | ProteinID:CDY32838.1 | SEG:seg | UniParc:UPI0004EEDB0A | UniProt:A0A078H7J5 | MapMan:27.4.5.3 |
Description
BnaC08g02600DBnaC08g02600D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7J5]
Coordinates
chrLK032300:-:288499..290458
Molecular Weight (calculated)
49921.4 Da
IEP (calculated)
9.596
GRAVY (calculated)
-0.409
Length
455 amino acids
Sequence
(BLAST)
(BLAST)
001: MEMEKKQGFF SALRDEVIRS FTPSRSRPRS RSASPSGCSR AAGGYHLASQ PEPLIGRSES LRPVIEGPVP DNDETQTDSK RIGSGLGHWV KGQMSRAPSV
101: ASTRSDLRLL LGVLGAPLAP IKVSSSIRDS PIETSTAHYI LQQYTAASGG QKLQNSVKNA YANGKVKMIT SELETPTRTV RNRNPTKPET GGFVLWQMNP
201: DMWYVELSVG SSKVRAGCNG KLVWRHTPWL GSHTASGPVR PLRRALQGLD PRTTAAIFAG SKCVGEKKVN GEDSFILKLC TDPGTLKARS EGPAEIVRHI
301: LFGYFSQRTG LLVQIEDSQL IRIQSNSGDA VYWETTINSS LEDYRQVEGI MIAHSGRSVV TLFRFGEVAM SHTRTKMEER WTIEEVAFNV PGLSQDCFIS
401: PADLRSSSLL TEACEYSDRE EKGKSSIVLA AHRAKVAALE KGKLGNDHPV WHIDV
101: ASTRSDLRLL LGVLGAPLAP IKVSSSIRDS PIETSTAHYI LQQYTAASGG QKLQNSVKNA YANGKVKMIT SELETPTRTV RNRNPTKPET GGFVLWQMNP
201: DMWYVELSVG SSKVRAGCNG KLVWRHTPWL GSHTASGPVR PLRRALQGLD PRTTAAIFAG SKCVGEKKVN GEDSFILKLC TDPGTLKARS EGPAEIVRHI
301: LFGYFSQRTG LLVQIEDSQL IRIQSNSGDA VYWETTINSS LEDYRQVEGI MIAHSGRSVV TLFRFGEVAM SHTRTKMEER WTIEEVAFNV PGLSQDCFIS
401: PADLRSSSLL TEACEYSDRE EKGKSSIVLA AHRAKVAALE KGKLGNDHPV WHIDV
001: MEKKQGFFSS LRDEVVRGLS PSRSRPRSRS ASPSRSTTPH MKALLWGRKK LIASSGCSGG GGVIGGERGG YYLSQPEPFI GRSSSLRPVM EGPDPDNGEV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV
101: SGVDSKRLGS GLSHWVKGQW SRAPSVTSTT PAYRKSDLRL LLGVMGAPLA PINVSSSSHL LHLTIRDSPT ETSSAQYILQ QYTAACGGHK LHNAIKNAYA
201: MGKLKMITSE LETPTGTVRN RNSTKSETGG FVLWQMNPDM WYVELSVGGS KVRAGCNGKL VWRHTPWLGS HTAKGPVRPL RRALQGLDPR TTATMFAESK
301: CVGERKVNGE DCFILKLCTD PETLRARSEG PAEIVRHILF GYFSQRTGLL AQIEDSQLTR IQSNDGDAVY WETTINSSLD DYKQVEGIMI AHSGRSVVTL
401: FRFGEVAMSH TRTKMEERWT IEEVAFNVPG LSLDCFIPPA DLRSGSLTEA CEYSGQEEKG KSSLALASTT AHRAKVAALE KGSFDNDPVW HIDV
Arabidopsis Description
Glutamyl-tRNA (Gln) amidotransferase subunit A (DUF620) [Source:UniProtKB/TrEMBL;Acc:Q9C6D0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.