Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 3
- plastid 2
- cytosol 1
- peroxisome 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... | |
| GSMUA_Achr10P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr2P01120_001 | |
| GSMUA_Achr3P09330_001 | |
| GSMUA_Achr3P25040_001 | |
| GSMUA_Achr5P07820_001 | |
| GSMUA_Achr5P25250_001 | |
| GSMUA_Achr5P27590_001 | |
| GSMUA_Achr6P15990_001 | |
| GSMUA_Achr6P21580_001 | |
| GSMUA_Achr6P23670_001 | |
| GSMUA_Achr6P36120_001 | |
| GSMUA_Achr8P00880_001 | |
| GSMUA_Achr8P05790_001 | |
| GSMUA_Achr8P08650_001 | |
| GSMUA_Achr9P17280_001 | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G27690.1 | GSMUA_Achr10P... | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr10P... | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr10P... | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr10P... | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr11P... | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr2P01120_001 | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr3P09330_001 | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr3P25040_001 | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr5P07820_001 | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr5P27590_001 | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr6P15990_001 | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr6P23670_001 | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr8P05790_001 | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr9P17280_001 | AT2G41100.1 | 17360592 |
| AT1G27690.1 | GSMUA_Achr11P... | AT3G07120.1 | 21798944 |
| AT1G27690.1 | GSMUA_Achr5P25250_001 | AT3G07120.1 | 21798944 |
| AT1G27690.1 | GSMUA_Achr8P00880_001 | AT3G07120.1 | 21798944 |
| AT1G27690.1 | GSMUA_Achr8P08650_001 | AT3G07120.1 | 21798944 |
| AT1G27690.1 | GSMUA_AchrUn_... | AT3G07120.1 | 21798944 |
| AT1G49840.1 | GSMUA_Achr6P21580_001 | AT1G21840.1 | 21798944 |
| AT3G19540.1 | GSMUA_Achr6P36120_001 | AT5G62880.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P14230_001 | Banana | cytosol, mitochondrion, nucleus, peroxisome | 73.54 | 77.07 |
| GSMUA_Achr3P02230_001 | Banana | cytosol, plastid | 47.71 | 74.59 |
| GSMUA_Achr10P... | Banana | cytosol | 59.79 | 73.78 |
| GSMUA_Achr6P16820_001 | Banana | cytosol | 67.71 | 73.7 |
| GSMUA_Achr4P32590_001 | Banana | cytosol | 68.33 | 72.57 |
| GSMUA_Achr6P24020_001 | Banana | cytosol | 58.96 | 70.57 |
| KRH35700 | Soybean | plastid | 66.67 | 69.26 |
| KRG91072 | Soybean | plastid | 66.67 | 69.11 |
| VIT_03s0091g00410.t01 | Wine grape | plastid | 68.12 | 68.84 |
| Solyc01g107350.2.1 | Tomato | plastid | 67.08 | 68.51 |
| PGSC0003DMT400066530 | Potato | plastid | 67.08 | 68.51 |
| PGSC0003DMT400055468 | Potato | plastid | 66.04 | 67.45 |
| VIT_18s0001g09450.t01 | Wine grape | plastid | 65.83 | 67.38 |
| CDX95439 | Canola | mitochondrion | 60.62 | 66.9 |
| CDY50147 | Canola | mitochondrion | 60.83 | 66.51 |
| KRH05611 | Soybean | plastid | 65.83 | 66.39 |
| KRH15430 | Soybean | plastid | 65.42 | 66.38 |
| GSMUA_Achr10P... | Banana | plastid | 56.88 | 65.16 |
| GSMUA_Achr2P13470_001 | Banana | cytosol | 59.38 | 64.92 |
| CDY67693 | Canola | mitochondrion | 60.62 | 64.1 |
| CDY46168 | Canola | mitochondrion | 60.62 | 63.82 |
| GSMUA_Achr7P00620_001 | Banana | mitochondrion | 53.75 | 63.39 |
| Bra022430.1-P | Field mustard | mitochondrion, plastid | 61.88 | 63.33 |
| Bra038214.1-P | Field mustard | mitochondrion, plastid | 60.42 | 63.18 |
| GSMUA_Achr2P21540_001 | Banana | plastid | 57.29 | 62.93 |
| AT3G19540.1 | Thale cress | plastid | 62.92 | 62.27 |
| CDY16530 | Canola | plastid | 58.12 | 61.73 |
| CDY32838 | Canola | plastid | 57.71 | 60.88 |
| AT1G49840.1 | Thale cress | plastid | 60.83 | 59.11 |
| AT1G27690.1 | Thale cress | plastid | 52.5 | 58.2 |
| Bra014219.1-P | Field mustard | plastid | 58.96 | 57.99 |
| Solyc04g078190.2.1 | Tomato | nucleus, plastid | 34.79 | 57.0 |
| CDY03939 | Canola | cytosol | 13.54 | 55.08 |
| CDY67976 | Canola | mitochondrion, plastid | 51.04 | 48.32 |
| CDX90103 | Canola | mitochondrion, plastid | 50.83 | 48.13 |
| Bra010924.1-P | Field mustard | mitochondrion, plastid | 52.92 | 47.57 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 31.88 | 46.79 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 36.46 | 46.17 |
| GSMUA_Achr3P29550_001 | Banana | cytosol | 34.17 | 46.07 |
| GSMUA_Achr9P25120_001 | Banana | mitochondrion | 31.46 | 44.81 |
| GSMUA_Achr2P13560_001 | Banana | cytosol | 33.75 | 42.97 |
| GSMUA_Achr4P27870_001 | Banana | cytosol | 33.96 | 42.89 |
| GSMUA_Achr5P28960_001 | Banana | cytosol | 38.75 | 42.66 |
| GSMUA_Achr6P33890_001 | Banana | cytosol | 30.62 | 38.38 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P26350_001 | EnsemblPlants:GSMUA_Achr7T26350_001 | EnsemblPlantsGene:GSMUA_Achr7G26350_001 | InterPro:DUF620 | PANTHER:PTHR31300 | PANTHER:PTHR31300:SF1 |
| PFAM:PF04788 | SEG:seg | UniParc:UPI0002956136 | UniProt:M0TKX1 | MapMan:27.4.5.3 | : |
Description
expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr7G26350_001]
Coordinates
chr7:-:27661258..27663525
Molecular Weight (calculated)
52059.4 Da
IEP (calculated)
9.277
GRAVY (calculated)
-0.177
Length
480 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKKQGFFSA LEGVVRGLSP ARGGGHQQQA LAQVPEAPVI ARSASFRPLS RAPSVTHSSS SSSASAAANG SCSFRGSDLR LLLGVMGAPL APIHVGTADP
101: LPHLSIKDTP IETSSAQYIL QQYTAASGGL KLHSSIRNAY AMGKVRMVAS EFETATKVVK NRGGSTRAAE SGSFVLWQMA PDMWYVELAV GGSKVHAGSN
201: GKLVWRHTPW LGAHAAKGPV RPLRRALQGL DPLTTASMFA SARCIGEKKV NGEDCFILKL CADPQTLRAR SEGPAEIIRH VLFGYFSQRT GLMVHMEDSH
301: LTRIQPNAGG DAVYWETTIN SFLDDYRPVE GIMIAHSGRS VVTLFRFGEE AMSHTKTRME EAWTIEEVAF NVPGLSVDCF IPPAEIRCGS IGGTCEMPQA
401: ERSRASIGNR VKVAAEKRQA AGDNKIVWRL EVPQRKQGGD RIVHTASFCA KEREREASFF FLLQALLPFP VTLDHHHLSC
101: LPHLSIKDTP IETSSAQYIL QQYTAASGGL KLHSSIRNAY AMGKVRMVAS EFETATKVVK NRGGSTRAAE SGSFVLWQMA PDMWYVELAV GGSKVHAGSN
201: GKLVWRHTPW LGAHAAKGPV RPLRRALQGL DPLTTASMFA SARCIGEKKV NGEDCFILKL CADPQTLRAR SEGPAEIIRH VLFGYFSQRT GLMVHMEDSH
301: LTRIQPNAGG DAVYWETTIN SFLDDYRPVE GIMIAHSGRS VVTLFRFGEE AMSHTKTRME EAWTIEEVAF NVPGLSVDCF IPPAEIRCGS IGGTCEMPQA
401: ERSRASIGNR VKVAAEKRQA AGDNKIVWRL EVPQRKQGGD RIVHTASFCA KEREREASFF FLLQALLPFP VTLDHHHLSC
001: MEKKQGFFSA LRHEVVRGLS PSRSRARSRS VSPARSSSPM SALTWGRKNL TGGGGGGGGG GYYLAQPEQL IGRSGSLRPV MEGPDPDEGG GGGNIGESKR
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
101: LGSGLGHWVK GQLSRAPSVA ATAAYRRNDL RLLLGVMGAP LAPIHVSSSD PLPHLSIKNT PIETSSAQYI LQQYTAASGG QKLQNSIKNA YAMGKLKMIT
201: SELETATRTV RNRNPSKAET GGFVLWQMNP DMWYVELAVG GSKVRAGCNG KLVWRHTPWL GSHTAKGPVR PLRRGLQGLD PRTTAAMFAE AKCIGEKKVN
301: GEDCFILKLC TDPETLKARS EGPAEIIRHV LFGYFSQKTG LLVHIEDSHL TRIQSNGGET VFWETTYNSS LDDYRQVEGI MIAHSGHSVV TLFRFGEVAT
401: SHTRTKMEES WTIEEVAFNV PGLSLDCFIP PADLKTGSLT ESCEYPQEER GKNNTLALSA AHRAKVAALE NGSLEDHRPV WHTDV
Arabidopsis Description
AT3g19540/T31J18_4 [Source:UniProtKB/TrEMBL;Acc:Q9LH41]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.