Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P08650_001 | Banana | nucleus | 23.97 | 67.37 |
| HORVU4Hr1G069780.1 | Barley | nucleus | 23.97 | 38.1 |
| GSMUA_AchrUn_... | Banana | nucleus | 37.08 | 37.22 |
| Bra015092.1-P | Field mustard | nucleus | 28.84 | 37.2 |
| HORVU1Hr1G049430.2 | Barley | cytosol, nucleus, plastid | 24.34 | 36.52 |
| HORVU5Hr1G123180.1 | Barley | cytosol, nucleus | 25.47 | 35.79 |
| Solyc06g007880.1.1 | Tomato | nucleus | 23.97 | 34.41 |
| CDX77379 | Canola | cytosol | 31.09 | 33.2 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 33.33 | 32.96 |
| AT3G25030.4 | Thale cress | cytosol | 30.71 | 32.8 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 28.46 | 32.34 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 39.33 | 32.21 |
| TraesCS3B01G459700.1 | Wheat | cytosol, mitochondrion, nucleus | 30.34 | 32.14 |
| PGSC0003DMT400003096 | Potato | nucleus | 23.97 | 32.0 |
| CDY69745 | Canola | cytosol | 29.21 | 31.84 |
| TraesCS3D01G419000.1 | Wheat | cytosol, mitochondrion, nucleus | 28.84 | 30.92 |
| AT4G13100.2 | Thale cress | extracellular | 29.96 | 30.19 |
| KRH07558 | Soybean | nucleus | 28.84 | 29.39 |
| CDY24647 | Canola | nucleus | 23.22 | 29.11 |
| Bra029623.1-P | Field mustard | nucleus | 22.85 | 28.5 |
| CDY05318 | Canola | nucleus | 22.47 | 28.3 |
| EES04107 | Sorghum | nucleus | 30.71 | 27.89 |
| TraesCS3A01G423800.1 | Wheat | cytosol | 26.59 | 27.84 |
| HORVU3Hr1G093580.1 | Barley | plastid | 28.84 | 27.8 |
| Zm00001d042359_P001 | Maize | cytosol, mitochondrion, nucleus | 31.09 | 27.12 |
| Os01t0917900-01 | Rice | nucleus | 31.46 | 26.84 |
| Zm00001d012045_P001 | Maize | cytosol, mitochondrion, nucleus | 29.59 | 26.42 |
| Bra001236.1-P | Field mustard | nucleus | 21.72 | 26.24 |
| KRH66042 | Soybean | nucleus | 25.84 | 25.27 |
| TraesCS3D01G259900.1 | Wheat | nucleus | 22.1 | 21.77 |
| AT3G07120.1 | Thale cress | nucleus | 29.21 | 21.67 |
| TraesCS3A01G259800.1 | Wheat | nucleus | 22.1 | 21.61 |
| Bra040362.1-P | Field mustard | nucleus | 27.34 | 21.1 |
| CDX74062 | Canola | cytosol, nucleus, plastid | 25.47 | 20.12 |
| HORVU3Hr1G064710.1 | Barley | cytosol | 21.35 | 16.62 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 7.87 | 12.14 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 7.49 | 11.36 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P00880_001 | EnsemblPlants:GSMUA_Achr8T00880_001 | EnsemblPlantsGene:GSMUA_Achr8G00880_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | ncoils:Coil | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 |
| PFscan:PS50089 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI0002969B1A | UniProt:M0TLJ0 |
| MapMan:35.2 | : | : | : | : | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_186.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr8G00880_001]
Coordinates
chr8:-:741116..742204
Molecular Weight (calculated)
29026.8 Da
IEP (calculated)
4.679
GRAVY (calculated)
-0.513
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MSEQLSNVDS SDPRDHVKVR EEDETDQSCR QSSDSVALTC EKRESSTASG GLRGGGRRLF DVIQQVREAN AAAAGGNSSG SGSKWKSLRD RIRRAGAAWA
101: AASSAQPHPI SDPELVVPSR RSPFLGRSVS RSVSVRNPYP ISDPELVVSS RSNPVRDRSV SLSVSQPARM SLMALLDMQW GGSGKEGLEA EEEEEDEEEE
201: EEVAEEEGEG AGDGMLYVCC VCMVRHKGAA FIPCGHTFCR LCSRELWVSR GNCPLCNGYI LEILDIF
101: AASSAQPHPI SDPELVVPSR RSPFLGRSVS RSVSVRNPYP ISDPELVVSS RSNPVRDRSV SLSVSQPARM SLMALLDMQW GGSGKEGLEA EEEEEDEEEE
201: EEVAEEEGEG AGDGMLYVCC VCMVRHKGAA FIPCGHTFCR LCSRELWVSR GNCPLCNGYI LEILDIF
001: MIQMDGGDRL RVTLLDRMST VENGRSSVTL EDILMAETSS FRSLTTPTTP VRNHSSSSLL DVMRRERRRD KTAWKSLRDK LRLKRTATGW ISSNPIPTLD
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREPPR MSLMELLEDN DGHMYELSAR DEVEVEGRDG CDGGGEAVAV
201: TGAAELGCCV CMVRSKGAAF IPCGHTFCRL CSRELWVQRG NCPLCNTAIL QVLDIF
101: NHILTPDNDS HRFNRLGFLL TNSETNRSSR DVSDAAEEAA EREGRLRLGT VLAAEREPPR MSLMELLEDN DGHMYELSAR DEVEVEGRDG CDGGGEAVAV
201: TGAAELGCCV CMVRSKGAAF IPCGHTFCRL CSRELWVQRG NCPLCNTAIL QVLDIF
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JS86]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.