Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 3
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P18240_001 | Banana | nucleus | 59.54 | 58.52 |
| KRH36518 | Soybean | mitochondrion | 45.66 | 40.31 |
| VIT_12s0059g01370.t01 | Wine grape | cytosol | 41.62 | 39.78 |
| Solyc07g049400.1.1 | Tomato | mitochondrion | 38.73 | 39.41 |
| KRH02010 | Soybean | cytosol | 44.51 | 38.89 |
| KRH11501 | Soybean | cytosol, mitochondrion, nucleus, plastid | 45.66 | 37.8 |
| PGSC0003DMT400001832 | Potato | nucleus | 38.15 | 37.71 |
| KRH51146 | Soybean | cytosol | 44.51 | 37.2 |
| CDY21289 | Canola | nucleus | 43.35 | 37.13 |
| Bra000784.1-P | Field mustard | nucleus | 42.2 | 36.14 |
| CDX90849 | Canola | nucleus | 42.2 | 36.14 |
| AT4G22250.1 | Thale cress | cytosol | 44.51 | 35.98 |
| Solyc02g081180.1.1 | Tomato | nucleus | 42.2 | 35.96 |
| AT4G03965.1 | Thale cress | cytosol | 41.62 | 34.45 |
| PGSC0003DMT400043086 | Potato | nucleus | 41.04 | 34.13 |
| CDX98736 | Canola | nucleus | 39.31 | 33.83 |
| Bra019391.1-P | Field mustard | nucleus | 37.57 | 32.99 |
| PGSC0003DMT400061842 | Potato | mitochondrion | 45.09 | 32.37 |
| CDX82926 | Canola | nucleus | 37.57 | 32.34 |
| Solyc03g031830.1.1 | Tomato | nucleus | 44.51 | 31.43 |
| CDX79140 | Canola | cytosol | 37.57 | 31.25 |
| AT1G62370.1 | Thale cress | cytosol | 35.26 | 29.9 |
| Bra034501.1-P | Field mustard | cytosol | 36.42 | 29.86 |
| CDY32036 | Canola | cytosol | 35.84 | 29.38 |
| CDY08650 | Canola | cytosol | 35.84 | 29.38 |
| Bra013603.1-P | Field mustard | cytosol | 26.59 | 22.66 |
| GSMUA_Achr8P08650_001 | Banana | nucleus | 6.94 | 12.63 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.5 | 12.03 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 16.18 | 11.91 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 16.18 | 10.37 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 12.14 | 7.87 |
Protein Annotations
| Gene3D:3.30.40.10 | MapMan:35.2 | EnsemblPlantsGene:GSMUA_Achr3G12970_001 | EnsemblPlants:GSMUA_Achr3P12970_001 | EnsemblPlants:GSMUA_Achr3T12970_001 | InterPro:IPR001841 |
| InterPro:IPR013083 | UniProt:M0SE64 | PFAM:PF13920 | ScanProsite:PS00518 | PFscan:PS50089 | PANTHER:PTHR12183 |
| PANTHER:PTHR12183:SF20 | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000296BDE8 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | SEG:seg | : | : | : | : |
Description
Putative Zinc finger, RING-type [Source:GMGC_GENE;Acc:GSMUA_Achr3G12970_001]
Coordinates
chr3:-:9558774..9559295
Molecular Weight (calculated)
18776.7 Da
IEP (calculated)
5.421
GRAVY (calculated)
-0.189
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAERIGRRK WRSLKKRLAL MGCCVSSWGF RASNPTIITD EIYPERPEEE VVVGMGGATS AEEMNLAAAL AAERNYRAAS VAEVGRVEGK RTEAPMPVSL
101: MRLLEEGEEN GEGEGGGGGE AWCCCCVCMG GRKGAAFIPC GHTFCRVCAR ELRADRGTCP LCNRPILDIL DIF
101: MRLLEEGEEN GEGEGGGGGE AWCCCCVCMG GRKGAAFIPC GHTFCRVCAR ELRADRGTCP LCNRPILDIL DIF
001: MSQLGVETSQ AQPETPQSTT FLDLLRLQMD GLDRSRRRKR TLKERLGFKR IGCCGPTWGL RLTSNTGEDD DEPFENRLVS GSDHVTGPLN QGMNLATALA
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5XV87]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.