Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g049400.1.1 | Tomato | mitochondrion | 80.57 | 82.94 |
| VIT_12s0059g01370.t01 | Wine grape | cytosol | 48.0 | 46.41 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 40.57 | 40.34 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 37.71 | 38.15 |
| PGSC0003DMT400043086 | Potato | nucleus | 39.43 | 33.17 |
| PGSC0003DMT400061842 | Potato | mitochondrion | 40.57 | 29.46 |
| PGSC0003DMT400003096 | Potato | nucleus | 8.0 | 7.0 |
| PGSC0003DMT400077589 | Potato | nucleus | 6.29 | 4.31 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400001832 | EnsemblPlantsGene:PGSC0003DMG400000688 | EntrezGene:102579999 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF22 | PFAM:PF13920 | PFscan:PS50089 |
| PGSC:PGSC0003DMG400000688 | RefSeq:XP_006357969.1 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI00029482DB |
| UniProt:M0ZJ61 | MapMan:35.2 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400000688]
Coordinates
chr7:+:45176956..45179905
Molecular Weight (calculated)
19999.9 Da
IEP (calculated)
5.167
GRAVY (calculated)
-0.563
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGEDRPRTM WRNLKQRLGF TGLVCCGSSW NLRVSDVTMR GEEEEEAQQF EAQLFGEEEP IIGDHQGNVN LATALAAERQ YRSVNATAEL KTLMRLFEET
101: DGRDEKKKKS LKWYIKEEGR GGIDEMCCVC MERNKGAAFI PCGHTYCRVC SKELWLKRGS CPLCNCSIDE ILNIF
101: DGRDEKKKKS LKWYIKEEGR GGIDEMCCVC MERNKGAAFI PCGHTYCRVC SKELWLKRGS CPLCNCSIDE ILNIF
001: MSQLGVETSQ AQPETPQSTT FLDLLRLQMD GLDRSRRRKR TLKERLGFKR IGCCGPTWGL RLTSNTGEDD DEPFENRLVS GSDHVTGPLN QGMNLATALA
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
101: AERNYRTEET EASGSLTPLK VSLMRLLEET AERVVVEENE TERVTASASS TVRGVNNDSV CCVCMGRKKG AAFIPCGHTF CRVCSREVWL NRGSCPLCNR
201: PIIEILDIY
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q5XV87]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.