Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400001832 | Potato | nucleus | 46.41 | 48.0 |
| Solyc07g049400.1.1 | Tomato | mitochondrion | 43.65 | 46.47 |
| GSMUA_Achr1P18240_001 | Banana | nucleus | 41.44 | 42.61 |
| GSMUA_Achr3P12970_001 | Banana | cytosol | 39.78 | 41.62 |
| VIT_00s0186g00090.t01 | Wine grape | cytosol, nucleus, plastid | 12.15 | 6.75 |
Protein Annotations
| EntrezGene:100253430 | wikigene:100253430 | Gene3D:3.30.40.10 | MapMan:35.2 | ProteinID:CCB51995 | ProteinID:CCB51995.1 |
| UniProt:F6HIE9 | EMBL:FN595765 | InterPro:IPR001841 | InterPro:IPR013083 | EntrezGene:LOC100253430 | wikigene:LOC100253430 |
| PFAM:PF13920 | PFscan:PS50089 | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF22 | SMART:SM00184 | SUPFAM:SSF57850 |
| UniParc:UPI00019846FD | ArrayExpress:VIT_12s0059g01370 | EnsemblPlantsGene:VIT_12s0059g01370 | EnsemblPlants:VIT_12s0059g01370.t01 | RefSeq:XP_002271383 | RefSeq:XP_002271383.1 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr12:+:6298522..6299251
Molecular Weight (calculated)
19943.1 Da
IEP (calculated)
7.838
GRAVY (calculated)
-0.248
Length
181 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGAERQGRW KNLKQRLRFK GIGCCGSSWS YNASSMSILE EIHHEEEEEL IIGVRPISAT NRRSSAYVSQ IPAASGMNLA SALAAERKSR TVGPTTAAET
101: AVPLKTLMRL IEETDGVDLM KNRDKEGGGD GVCCVCMERN KGAAFIPCGH TFCRVCSREL WLNRGCCPIC NRSILEILDI F
101: AVPLKTLMRL IEETDGVDLM KNRDKEGGGD GVCCVCMERN KGAAFIPCGH TFCRVCSREL WLNRGCCPIC NRSILEILDI F
001: MMSELDLGTS QRMTETHRTT TTFLDLLRRQ MSGHDLTRRK RTLKERLRFK CIGCCGPTWN LRLTNNTTLH SPTSRDDEIE ELQIETGLVL ESDHGSGTGM
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GXD8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.