Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 5
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P12970_001 | Banana | cytosol | 58.52 | 59.54 |
| Solyc07g049400.1.1 | Tomato | mitochondrion | 40.34 | 41.76 |
| VIT_12s0059g01370.t01 | Wine grape | cytosol | 42.61 | 41.44 |
| KRH36518 | Soybean | mitochondrion | 46.02 | 41.33 |
| PGSC0003DMT400001832 | Potato | nucleus | 40.34 | 40.57 |
| KRH11501 | Soybean | cytosol, mitochondrion, nucleus, plastid | 47.16 | 39.71 |
| KRH02010 | Soybean | cytosol | 43.75 | 38.89 |
| KRH51146 | Soybean | cytosol | 45.45 | 38.65 |
| CDY21289 | Canola | nucleus | 44.32 | 38.61 |
| Bra000784.1-P | Field mustard | nucleus | 42.61 | 37.13 |
| CDX90849 | Canola | nucleus | 42.61 | 37.13 |
| Solyc02g081180.1.1 | Tomato | nucleus | 42.61 | 36.95 |
| PGSC0003DMT400061842 | Potato | mitochondrion | 50.57 | 36.93 |
| PGSC0003DMT400043086 | Potato | nucleus | 43.18 | 36.54 |
| AT4G22250.1 | Thale cress | cytosol | 43.75 | 35.98 |
| AT4G03965.1 | Thale cress | cytosol | 42.61 | 35.89 |
| CDX82926 | Canola | nucleus | 39.2 | 34.33 |
| Solyc03g031830.1.1 | Tomato | nucleus | 47.73 | 34.29 |
| Bra019391.1-P | Field mustard | nucleus | 38.07 | 34.01 |
| CDX98736 | Canola | nucleus | 38.64 | 33.83 |
| AT1G62370.1 | Thale cress | cytosol | 38.07 | 32.84 |
| CDX79140 | Canola | cytosol | 38.07 | 32.21 |
| Bra034501.1-P | Field mustard | cytosol | 36.93 | 30.81 |
| CDY32036 | Canola | cytosol | 36.36 | 30.33 |
| CDY08650 | Canola | cytosol | 36.36 | 30.33 |
| Bra013603.1-P | Field mustard | cytosol | 27.27 | 23.65 |
| GSMUA_Achr8P08650_001 | Banana | nucleus | 7.39 | 13.68 |
| GSMUA_AchrUn_... | Banana | nucleus | 18.75 | 12.41 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plastid | 14.2 | 10.64 |
| GSMUA_Achr5P25250_001 | Banana | cytosol | 13.07 | 8.52 |
| GSMUA_Achr8P00880_001 | Banana | nucleus | 11.36 | 7.49 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P18240_001 | EnsemblPlants:GSMUA_Achr1T18240_001 | EnsemblPlantsGene:GSMUA_Achr1G18240_001 | Gene3D:3.30.40.10 | InterPro:IPR001841 | InterPro:IPR013083 |
| InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PANTHER:PTHR12183 | PANTHER:PTHR12183:SF20 | PFAM:PF13920 |
| PFscan:PS50089 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000296317E |
| UniProt:M0S0Y2 | MapMan:35.2 | : | : | : | : |
Description
Putative uncharacterized protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G18240_001]
Coordinates
chr1:+:13632055..13632585
Molecular Weight (calculated)
19774.4 Da
IEP (calculated)
4.892
GRAVY (calculated)
-0.514
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAERIRRRK WKSLKERLSL MGCCASGWGF RASNPTTITI NDEEEAEEYG IHRNHREEQA EEAGSGEAVE MNLAAALAAE RQYRAISAAA DERLEQDEAE
101: GVERVSLMRL LEEGEENRGG GGDGWCWCCV CMGRRKGAAF IPCGHTFCRV CAREMWVNRG SCPLCNRPIV DILDIF
101: GVERVSLMRL LEEGEENRGG GGDGWCWCCV CMGRRKGAAF IPCGHTFCRV CAREMWVNRG SCPLCNRPIV DILDIF
001: MMSELDLGTS QRMTETHRTT TTFLDLLRRQ MSGHDLTRRK RTLKERLRFK CIGCCGPTWN LRLTNNTTLH SPTSRDDEIE ELQIETGLVL ESDHGSGTGM
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
101: NLATALEAER YNRGESTEAE ADMTPRRVSL MRLLEETAEK IVDDDGKETE ILTASIGTLT GNDSVCCVCM GRKKGAAFIP CGHTFCRVCS RELWLNRGSC
201: PLCNRPIIEI LDIF
Arabidopsis Description
RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q8GXD8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.