Factsheet for GSMUA_Achr11P17990_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P02250_001
GSMUA_Achr4P28090_001
GSMUA_Achr4P32240_001
GSMUA_Achr5P01930_001
GSMUA_Achr5P21840_001
GSMUA_Achr5P27050_001
GSMUA_Achr6P01850_001
GSMUA_Achr6P31740_001
GSMUA_Achr7P08150_001
GSMUA_Achr8P06630_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32295.1	GSMUA_Achr2P02250_001	AT2G47700.1	21798944
AT4G32295.1	GSMUA_Achr5P27050_001	AT2G47700.1	21798944
AT4G32295.1	GSMUA_Achr8P06630_001	AT2G47700.1	21798944
AT4G32295.1	GSMUA_Achr11P...	AT3G48150.1	21798944
AT4G32295.1	GSMUA_Achr10P...	AT3G49690.1	21798944
AT4G32295.1	GSMUA_Achr4P28090_001	AT3G49690.1	21798944
AT4G32295.1	GSMUA_Achr4P32240_001	AT3G49690.1	21798944
AT4G32295.1	GSMUA_Achr5P01930_001	AT3G49690.1	21798944
AT4G32295.1	GSMUA_Achr5P21840_001	AT3G49690.1	21798944
AT4G32295.1	GSMUA_Achr6P01850_001	AT3G49690.1	21798944
AT4G32295.1	GSMUA_Achr6P31740_001	AT3G49690.1	21798944
AT4G32295.1	GSMUA_Achr7P08150_001	AT3G49690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P20490_001	Banana	mitochondrion	67.02	67.72
AT4G32295.1	Thale cress	cytosol	30.89	49.58
CDX75234	Canola	cytosol	31.94	47.84
CDX68833	Canola	nucleus	31.94	47.29
Bra011335.1-P	Field mustard	nucleus	32.2	46.42
Bra023956.1-P	Field mustard	cytosol	31.15	45.77
CDY13480	Canola	cytosol	31.15	45.77
CDX72353	Canola	cytosol	28.27	44.63
KRH61761	Soybean	nucleus	30.63	42.55
KRH52430	Soybean	nucleus	30.63	42.24
Bra015008.1-P	Field mustard	nucleus	34.82	41.18
CDX77461	Canola	nucleus	34.82	41.18
CDX85164	Canola	nucleus	34.82	41.18
VIT_11s0016g05510.t01	Wine grape	nucleus	34.03	38.58
CDY45344	Canola	nucleus	23.82	38.08
CDY18077	Canola	nucleus	32.72	37.99
Bra028356.1-P	Field mustard	nucleus	32.72	37.99
AT3G24150.1	Thale cress	nucleus	34.03	37.9
KRH54950	Soybean	nucleus	32.2	36.5
KRH20129	Soybean	mitochondrion, nucleus	37.43	35.48
Solyc08g059700.1.1	Tomato	nucleus	31.41	35.4
VIT_04s0008g05520.t01	Wine grape	nucleus	40.84	34.59
KRH03673	Soybean	mitochondrion, nucleus	37.17	33.65
PGSC0003DMT400082721	Potato	nucleus	31.15	33.52
PGSC0003DMT400079381	Potato	nucleus	35.86	28.48
Solyc07g008100.2.1	Tomato	nucleus	36.39	28.02
CDY45343	Canola	nucleus	1.57	20.0

Protein Annotations

EnsemblPlants:GSMUA_Achr11P17990_001	EnsemblPlants:GSMUA_Achr11T17990_001	EnsemblPlantsGene:GSMUA_Achr11G17990_001	Gene3D:1.10.246.20	PANTHER:PTHR35300	SEG:seg
UniParc:UPI00029501A8	UniProt:M0RT79	MapMan:15.5.53.5.2	:	:	:

Description

Putative Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr11G17990_001]

Coordinates

chr11:-:19504509..19506942

Molecular Weight (calculated)

42300.5 Da

IEP (calculated)

7.282

GRAVY (calculated)

-0.619

Length

382 amino acids

Sequence
(BLAST)

001: MPRPGPRPYE CVRRAWHSDR HQPIRGSIIQ EIFRVANDVH SPATRKNKEF QEKLPFVVLK AEEIMYSKAN SEAEYVDLKT LRDRVNDAID TIIRKEDGTE
101: SGDLLQPCIE AALNLGCIPR RVSKSQHRSN PVCYLSPVAN DNRTASLKIS DSNSLESMLQ KKHNQGKLQT SASEFPSWYT AVFRPPNMTC SSIPEVKFNN
201: SGVSGGHINS SVFNRTECPI SIKPSAYCQE RVSVPLASYT CPNLAGVYPL YYSDSRRDVV SGQHFQITQG PRHHMATATM RCAESPDEAE ISFTESPIGS
301: NIGASKADST HMETSKIGWD LSLRLGLPSP PSFGESTWPN EHEDAGSSNS SDGSKYYDLS VARERVINFG GTNSPQDKGL SL

Best Arabidopsis Sequence Match ( AT3G24150.2 )
(BLAST)

001: MPRPGPRPYE CVKRAWHSDR HQPIRGSIIR QIFRLAMEAH SAATRKNKEW QEKLPVVVLK AEEIMYSKAN SEEEYTDADT MWNRVNDAID TIIRRDESTE
101: TGPLLPPCVE AALNLGCIAV RASRSQRHSS GRTYLGPKIQ EPVSASTNEP SYHHEYRQQA QQSSTKPSQT VQAAVPVDVL DNSNKRVATP RGYPFLHESM
201: QMHQKPLAIR QGTGPASAPA PAPVNLGSVY PLYYEGNNQT QQADMSFRVP EAPIIIGMPI GIKPSEEATE RVCDLSLRLG ISSEPSTRID VGSSRAYPGR
301: NQEELCLFAE VKKNDRFEWF SNSEGQNSDS RVKKHRTLCG DFL

Arabidopsis Description

Uncharacterized protein At3g24150 [Source:UniProtKB/TrEMBL;Acc:Q0WQ76]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.